« Back to Arabidopsis halleri search


Detailed information on CNT30478186


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 8e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375998Arabidopsis halleriArabidopsis thaliana19.4133.2396.43112forward
CNT30728535Arabidopsis halleriCorchorus capsularis11.962088.4169forward

Expression of CNT30478186

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LPGRTISSSLDPLLDPTGQTHCHRQDCNI*

>peptide 2 (49 aa)
SAWTNHFKFSGSSARPNGSNPLSPARLQYIIVSVPITLTKPVSNKPGRT*

Sequence

>CNT30478186
CTCTGCCTGGACGAACCATTTCAAGTTCTCTGGATCCTCTGCTAGACCCAACGGGTCAAACCCATTGTCACCGGCAAGACTGCAATATATAATAGTAAGC
GTACCAATCACATTAACTAAACCGGTATCGAACAAACCCGGTCGAACCTAACCAATCCAGATTGATTATTCAATTGATCCGGTTGTGTTCAAGTAAATTA
CTATTACACTTAAAACTAAACCGGTATCGGACTGACCTAACCTAACCAAGGTGGTTCCGGTTGTTTTAAACCGAAAGTGAATGTAGTTCGCAAAATTACC
TGCCGGTGAGATAATCAGGCGATGCCAAACCGGGCAACCATTGTCCTTTCTTAGCCTCAACCTTGAACGACGACGTTTTGGACGATGAACCGATTGATTT
AAACGACAAGTCGCGGTTCAACCTACCGGAAGAACCGGTGAGGAATCTTGGCTTTGAAGTAGTACAAGTCGCCATTATTATCCCTAGACTTAGAAGATCC
GACCGAGAACCCGGTTACTGTAAGAAGAATGGATTGGAATCAAGAGAGATAGAGAGATGAAGTTCAGAGATGATTGT