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Detailed information on CNT3038035


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Cucumis meloOryza sativa30.8314.9580.92152forward
CNT30675752Cucumis meloSetaria viridis33.2728.2380.49164forward
CNT30523687Cucumis meloSetaria italica33.2723.280.49164forward
CNT30513051Cucumis meloJuglans regia16.8434.384.3483forward
CNT30270368Cucumis meloChenopodium quinoa32.2530.482.39159forward
CNT30728535Cucumis meloCorchorus capsularis25.7636.8185.04127forward
CNT30381598Cucumis meloManihot esculenta25.3522.4881.6125forward
CNT30526306Cucumis meloPhaseolus vulgaris26.5713.9885.5131forward
CNT30708791Cucumis meloGlycine max32.8622.185.19162forward
CNT30564637Cucumis meloActinidia chinensis31.0313.4381.05153forward
CNT30591239Cucumis meloMusa acuminata38.7468.2182.2191forward
CNT3084615Cucumis meloVigna radiata35.715.2584.66176forward
CNT30144644Cucumis meloMedicago truncatula29.4138.2682.76145forward
CNT30605371Cucumis meloGossypium raimondii19.0737.0186.1794forward
CNT30626732Cucumis meloDaucus carota31.0312.2280.39153forward
CNT30685421Cucumis meloTriticum urartu9.9420.5991.8449forward
CNT30339489Cucumis meloEragrostis tef28.88.3580.99142forward
CNT30370931Cucumis meloOryza glumipatula30.838.8181.58152forward
CNT30414433Cucumis meloPapaver somniferum41.1816.3779.31203forward
CNT30103133Cucumis meloOryza rufipogon30.8321.1781.58152forward
CNT30117373Cucumis meloOryza nivara30.839.7181.58152forward
CNT30604463Cucumis meloOryza punctata31.0313.0483.66153forward

Expression of CNT3038035

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLLHITNSISNTTLQKHTLESISVHINHFYS*

>peptide 2 (41 aa)
MVLCHGSEMCCKRLSNGEVLCLSGVVPLRGVDDSNLRENFR*

>peptide 3 (36 aa)
EPNSCHLKNNIQATMTSPSTFCTLIFHYVVAYYKFH*

>peptide 4 (72 aa)
RAKFMSFKEQHPSYNDKPLHLLYTDIPLCCCILQIPLATPHSKNILSKVSQFISTIFTLNTTTTTTFQTNQT*

>peptide 5 (31 aa)
MSGQWCCAMGLRCVAKDCQMAKYSAFPASYH*

Sequence

>CNT3038035
AGAGCCAAATTCATGTCATTTAAAGAACAACATCCAAGCTACAATGACAAGCCCCTCCACCTTCTGTACACTGATATTCCACTATGTTGTTGCATATTAC
AAATTCCATTAGCAACACCACACTCCAAAAACATACTCTCGAAAGTATCTCAGTTCATATCAACCATTTTTACTCTTAATACAACAACAACAACAACCTT
CCAAACAAACCAAACTTAGTTGCCACCAAATGTCTGGACAATGGTGTTGTGCCATGGGTCTGAGATGTGTTGCAAAAGATTGTCAAATGGCGAAGTACTC
TGCCTTTCCGGCGTCGTACCATTGAGGGGCGTTGATGATTCCAATCTTCGTGAAAACTTCCGGTAGAAGCATTCCTGCGACACCCAGCATCGCCCACCGC
CCATTCACCAGCTCCGCTTGAACAAACCACCTCAAATTCTCTGGGTCTTCCGCTAATCCCAATGGGTCAAATCCATTGTCACCGGGAAGACTG