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Detailed information on CNT30375244


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522989Arabidopsis thalianaSetaria italica28.5215.7280.14146forward
CNT30729011Arabidopsis thalianaCorchorus capsularis30.8623.5583.54158forward
CNT30636619Arabidopsis thalianaCapsicum annuum33.9822.3483.91174forward
CNT30458863Arabidopsis thalianaSaccharum spontaneum31.0511.3879.87159forward
CNT30649836Arabidopsis thalianaRosa chinensis32.6214.8882.63167forward
CNT30717283Arabidopsis thalianaMalus domestica golden30.2723.1383.23155forward
CNT30120586Arabidopsis thalianaCitrus clementina18.7528.7483.3396forward
CNT3036222Arabidopsis thalianaCucumis melo23.6333.0680.99121forward

Expression of CNT30375244

Peptides detected in this lncRNA

>peptide 1 (31 aa)
TNQRTKYNNLGSRSGKSTETDFQIPQEVQQK*

>peptide 2 (38 aa)
MTFLFGRVFKILNSKKQNPIKIKTQIQKENEEKTLIIR*

>peptide 3 (39 aa)
MLSTCNPSRETLGLSDPGVTMLGFKSVPSSKTWWSLRAL*

Sequence

>CNT30375244
TACGAATCAGAGAACCAAATACAATAATTTAGGCTCAAGAAGCGGTAAATCAACAGAAACTGATTTTCAAATTCCACAAGAGGTTCAACAGAAATAACCT
CAAATGACTTTTTTATTTGGGCGTGTTTTTAAAATACTCAATTCTAAAAAACAAAACCCAATCAAAATCAAAACACAAATCCAAAAGGAAAATGAAGAAA
AAACACTTATAATCCGATAATGTCAAGTAGAAAAACGAAAAATCCCTAGAAATATATCCAGGAAGATGACAAACGTCACAATTCAACCCGTGGACGATGC
TCAGTACTTGTAATCCTTCACGTGAAACCTTGGGGCTGTCAGATCCGGGAGTAACCATGTTAGGCTTCAAGAGTGTACCCTCGAGCAAGACGTGGTGGTC
GCTAAGAGCCTTGTAGCAAGCTGCAAGGACACGCTCAGTCACGGCAGCACACTTCTGGATGTCATGGGATCCATCGACTAGGATCTCAGGCTCGACAATT
GGTACAAGACCG