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Detailed information on CNT30579362


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 8e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Echinochloa crusgalliOryza sativa49.5456.493.52432forward
CNT30678303Echinochloa crusgalliSetaria viridis22.3654.7897.95195forward
CNT30639185Echinochloa crusgalliNymphaea colorata35.5572.683.23310forward
CNT30515273Echinochloa crusgalliJuglans regia23.3931.8380.39204forward
CNT30630495Echinochloa crusgalliVigna unguiculata34.2952.7379.93299forward
CNT30710333Echinochloa crusgalliGlycine max36.3536.4482.65317forward
CNT30122581Echinochloa crusgalliPhyscomitrium patens16.5120.4382.64144forward
CNT30299532Echinochloa crusgalliTriticum aestivum28.2148.2494.31246forward
CNT30395090Echinochloa crusgalliTriticum turgidum49.239.9192.07429forward
CNT30554655Echinochloa crusgalliOryza glaberrima49.5449.3793.52432forward
CNT30440464Echinochloa crusgalliAegilops tauschii49.251.6992.07429forward
CNT30246994Echinochloa crusgalliAvena sativa49.251.3893.01429forward
CNT30665756Echinochloa crusgalliTriticum dicoccoides42.5552.2592.99371forward
CNT30228866Echinochloa crusgalliAnanas comosus26.9526.8989.36235forward
CNT30344027Echinochloa crusgalliEragrostis tef45.7649.3894.49399forward
CNT30619829Echinochloa crusgalliCajanus cajan36.3532.1583.28317forward
CNT30596794Echinochloa crusgalliOryza meridionalis33.644.1995.22293forward
CNT30356274Echinochloa crusgalliLactuca sativa36.4748.7779.56318forward
CNT30370811Echinochloa crusgalliOryza glumipatula49.5454.6193.52432forward
CNT30148662Echinochloa crusgalliBrachypodium distachyon35.4440.1392.56309forward
CNT30577354Echinochloa crusgalliOryza barthii49.5452.5593.52432forward
CNT30499040Echinochloa crusgalliDigitaria exilis24.8931.9193.09217forward
CNT30117312Echinochloa crusgalliOryza nivara49.5454.8293.52432forward
CNT30174623Echinochloa crusgalliVigna angularis29.730.481.08259forward
CNT30113105Echinochloa crusgalliFicus carica37.2740.6287.08325forward

Expression of CNT30579362

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MGDGVLGSSCGGTNPLGASAVAAAADSSAAARRGAGPRRLGRRPGGGQKVARGGGGLRGHGHGGWGSAELELLEQDERMLSK*

>peptide 2 (53 aa)
VTFVSVWASNDQSPKLNQHVHIIPCSSSRITKKVKLHIDPPSNHPTTPSSAAN*

Sequence

>CNT30579362
CCGTAACGTTCGTCAGCGTGTGGGCATCTAACGACCAGTCACCAAAATTAAATCAACATGTACATATAATTCCATGTAGCAGCTCCAGAATCACCAAGAA
AGTAAAATTACATATCGACCCTCCATCAAACCACCCAACAACACCATCATCAGCAGCTAATTAATTAACGATCGGATTGCGCGCGCGGGACGATCGACGA
CGAGATGAAGATTGATTCTTAGAGGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCC
ACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGT
TGATCTTGTACTTGGAGCGCAGCCTGGTGCCCAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGCAGGTTGGGCCCCTCCCGCATGATGGCGGCGCC
GCCCGTCGGCATCTCGAACACCTGCTCCTTGGGGGAGCTCCACGTGATCACGTAGAACTCCTCCACCTGCGCCTTGCGGAGGAGCCCGCCGGTGCTGCCG
CCGAAGATGGGCGACGGGGTGTTGGGGTCCAGCTGCGGGGGTACGAACCCCTTGGGGGCCTCCGCCGTCGCCGCCGCCGCGGACTCCTCCGCCGCCGCCC
GGAGAGGGGCCGGCCCGCGGCGCCTTGGCCGGCGACCAGGCGGCGGCCAGAAGGTGGCGCGTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGCGGATG
GGGATCGGCGGAGCTGGAGCTGCTGGAGCAAGATGAGAGGATGTTGAGCAAGTAGTGGAGGGCGCGGCGGTG