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Detailed information on CNT30499040


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695553Digitaria exilisOryza sativa30.8837.8490.95210forward
CNT30678616Digitaria exilisSetaria viridis19.7127.4694.78134forward
CNT30522020Digitaria exilisSetaria italica29.5642.4194.53201forward
CNT30639255Digitaria exilisNymphaea colorata15.2928.7384.62104forward
CNT30515464Digitaria exilisJuglans regia29.1217.8479.8198forward
CNT30630888Digitaria exilisVigna unguiculata26.7626.8882.42182forward
CNT30710396Digitaria exilisGlycine max17.524.3484.03119forward
CNT30299532Digitaria exilisTriticum aestivum27.7937.0693.12189forward
CNT30393705Digitaria exilisTriticum turgidum27.7920.7793.12189forward
CNT30554655Digitaria exilisOryza glaberrima30.882490.95210forward
CNT30440464Digitaria exilisAegilops tauschii27.7922.7793.12189forward
CNT30247647Digitaria exilisAvena sativa25.5928.2592.53174forward
CNT30665854Digitaria exilisTriticum dicoccoides27.7935.9393.12189forward
CNT301538Digitaria exilisZea mays22.6528.189.61154forward
CNT30228866Digitaria exilisAnanas comosus29.562385.07201forward
CNT30344027Digitaria exilisEragrostis tef31.7626.7391.67216forward
CNT30619829Digitaria exilisCajanus cajan26.7618.4682.97182forward
CNT30596794Digitaria exilisOryza meridionalis30.8831.6790.48210forward
CNT30370885Digitaria exilisOryza glumipatula30.8830.2690.95210forward
CNT30148202Digitaria exilisBrachypodium distachyon28.6835.7889.74195forward
CNT30577354Digitaria exilisOryza barthii30.8825.5590.95210forward
CNT30579362Digitaria exilisEchinochloa crusgalli31.9124.8993.09217forward
CNT30117312Digitaria exilisOryza nivara30.8826.6590.95210forward
CNT30174623Digitaria exilisVigna angularis26.7621.3684.07182forward
CNT30558912Digitaria exilisPanicum hallii10.1526.8594.269forward

Expression of CNT30499040

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MAIGGGGRGLLGAKRGWSKEVGGMDNGGVEWRGGGAAAAKRRRCGLGGESGWRS

>peptide 2 (28 aa)
MEEWSGVAVELRQLRGDAVVWVARAGGEV

>peptide 3 (73 aa)
MHIDRSSHEPVPYPRIWNNNYLSEEEEDVHHQMRVQRSKVFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

>peptide 4 (84 aa)
MEQQLLKRRRRRCSSSDESSEVEGVLAGELDLDGANILADATEVLPNSLPAGVDLLRVDAILGVKVLDLTVGEDAVELVVNLVL*

>peptide 5 (37 aa)
MITFPNQHLHIINSMHCSTITKKNLIVKLHAYRPILP*

Sequence

>CNT30499040
CGGTGAATACGTCAAGGTGGACATGGCATGATCACTTTCCCAAATCAACATTTACATATAATTAATTCCATGCACTGCAGCACCATCACCAAGAAAAACT
TGATAGTAAAATTACATGCATATCGACCGATCCTCCCATGAACCAGTACCGTACCCAAGGATATGGAACAACAACTACTTAAGCGAAGAAGAAGAAGATG
TTCATCATCAGATGAGAGTTCAGAGGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTAACATTCTTGCCGATGCTACGGAAGTTCTGCCC
AACTCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCATCCTTGGGGTGAAGGTACTGGACCTCACCGTTGGGGAAGACGCGGTAGAACTGGTAG
TTAATCTTGTACTTTGACCGCAGCCTCGTCCCCAGCGCGAGCTGGGACGGCGAGCGCGGCGCCTTGTTCGCCGGGGCCGCCAGCAGGTGGCGAATCGCGG
CGGAGGCTTGCGTGGCCATGGCCATCGGAGGAGGAGGACGCGGGCTTCTTGGGGCGAAGCGAGGATGGAGCAAGGAGGTGGGGGGAATGGACAATGGAGG
AGTGGAGTGGCGTGGCGGTGGAGCTGCGGCAGCTAAGAGGCGACGCTGTGGTTTGGGTGGCGAGAGCGGGTGGAGAAGTG