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Detailed information on CNT30678303


BLAST search results

BLAST vs Swiss-Prot:
sp|P12372|PSAD_SOLLC, E-value = 7e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Setaria viridisOryza sativa54.7825.4693.85195forward
CNT30522020Setaria viridisSetaria italica54.7841.14100195forward
CNT30639185Setaria viridisNymphaea colorata44.9437.4783.12160forward
CNT30515464Setaria viridisJuglans regia39.6112.782.27141forward
CNT30630888Setaria viridisVigna unguiculata26.9714.1886.4696forward
CNT30710396Setaria viridisGlycine max39.3328.6383.57140forward
CNT30122581Setaria viridisPhyscomitrium patens24.4412.3486.2187forward
CNT30395090Setaria viridisTriticum turgidum54.7818.1493.85195forward
CNT30554655Setaria viridisOryza glaberrima54.7822.2993.85195forward
CNT30440464Setaria viridisAegilops tauschii54.7823.4993.33195forward
CNT30246994Setaria viridisAvena sativa54.7823.3593.85195forward
CNT30665854Setaria viridisTriticum dicoccoides54.7837.0793.85195forward
CNT30228866Setaria viridisAnanas comosus42.1317.1691.33150forward
CNT30344027Setaria viridisEragrostis tef54.2123.8996.37193forward
CNT30619829Setaria viridisCajanus cajan46.3516.7385.45165forward
CNT30596794Setaria viridisOryza meridionalis54.7829.4193.33195forward
CNT30370811Setaria viridisOryza glumipatula54.7824.6593.85195forward
CNT30570681Setaria viridisVitis vinifera36.89.5885.5131forward
CNT30148662Setaria viridisBrachypodium distachyon53.6524.8193.72191forward
CNT30577354Setaria viridisOryza barthii54.7823.7293.85195forward
CNT30579362Setaria viridisEchinochloa crusgalli54.7822.3697.95195forward
CNT30117312Setaria viridisOryza nivara54.7824.7593.85195forward
CNT30174623Setaria viridisVigna angularis26.9711.2788.5496forward
CNT30113105Setaria viridisFicus carica43.8219.588.46156forward

Expression of CNT30678303

Peptides detected in this lncRNA

>peptide 1 (64 aa)
IASPKSTFTYSSMHHLHDHQENLIIVIKLHIDRPSINHPTPAKRKRWMRSLRCRSSAPRPACRR*

Sequence

>CNT30678303
CATCGCATCACCAAAATCAACATTTACATATAGTTCCATGCATCACCTCCACGATCACCAAGAAAACCTGATTATAGTAATAAAATTACATATCGATCGA
CCCTCCATCAACCACCCAACACCAGCTAAGAGAAAGAGATGGATGAGATCACTTAGATGTCGAAGTTCTGCCCCACGCCCTGCCTGCCGGCGTTGACCTT
CTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGGACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTG
GTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGGAGGTTGGGCCCCTC