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Detailed information on CNT30356274


BLAST search results

BLAST vs Swiss-Prot:
sp|P32869|PSAD_CUCSA, E-value = 2e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Lactuca sativaOryza sativa48.7741.5178.93318forward
CNT30677834Lactuca sativaSetaria viridis22.8531.4383.89149forward
CNT30522550Lactuca sativaSetaria italica22.8531.383.89149forward
CNT30639185Lactuca sativaNymphaea colorata43.165.8181.14281forward
CNT30515273Lactuca sativaJuglans regia56.4457.4180.98368forward
CNT30376473Lactuca sativaArabidopsis thaliana66.4161.6880.14433forward
CNT30710333Lactuca sativaGlycine max64.8848.6282.74423forward
CNT30299761Lactuca sativaTriticum aestivum12.8821.5986.984forward
CNT30554655Lactuca sativaOryza glaberrima48.7736.3478.93318forward
CNT30145793Lactuca sativaMedicago truncatula61.566.1779.8401forward
CNT30249833Lactuca sativaAvena sativa12.8822.5289.2984forward
CNT30262Lactuca sativaZea mays21.7828.483.1142forward
CNT30651207Lactuca sativaRosa chinensis34.8233.5384.58227forward
CNT30477824Lactuca sativaArabidopsis halleri30.2159.1682.74197forward
CNT30619829Lactuca sativaCajanus cajan67.6444.7381.63441forward
CNT30370811Lactuca sativaOryza glumipatula48.7740.278.93318forward
CNT30428061Lactuca sativaPapaver somniferum64.7229.4580.81422forward
CNT30570681Lactuca sativaVitis vinifera22.0910.5384.03144forward
CNT30577354Lactuca sativaOryza barthii48.7738.6978.93318forward
CNT30579362Lactuca sativaEchinochloa crusgalli48.7736.4779.56318forward
CNT30117312Lactuca sativaOryza nivara48.7740.3678.93318forward
CNT30174623Lactuca sativaVigna angularis40.9531.3483.52267forward
CNT30113105Lactuca sativaFicus carica52.9143.1282.32345forward
CNT30725909Lactuca sativaLupinus angustifolius28.0732.5683.61183forward
CNT3049718Lactuca sativaCucumis sativus50.9263.684.04332forward

Expression of CNT30356274

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MGDGVLGSSSGGVNPTGASLVGVSLSCFTAVKEDCFHGETGFESVGVKREACAAMAIEDCRWMKMVRCL*

Sequence

>CNT30356274
GTACATAATCACAAATCCATCATATATCATATGGTTGCTTGCCGGTGAACTTGACTTCAATTGGGCTAACATTCTTTCCAATTGACCTCATGTTTTGACC
CACACCTTGTCGGCCGGCGTTCACCTTTTCCGGGTAAACCCCATCTTTAGGGTGCAAATACTGTACTTCACCATTTGGGAACACCCTGTAGAACTGATAC
TTGATCTTGTATTTCGACCTCAATCTAGTTCCCAAAGCCAAACACTGCTCCTTCCTCGCCAATTTCAATAGATTAGGTCCTTCCCTCATGATCGCAGCGC
CTCCCGTCGGCATCTCGAAGATCTGCTCCTTGGGGGATTCCCATGTGATGACGTAGAACTCCTCCACCTGAGCTTTTCGGAGCAATCCACCGGTGCTTCC
AGCGAAGATGGGAGATGGGGTGTTGGGGTCGAGTTCCGGTGGGGTGAATCCAACTGGAGCTTCTTTAGTGGGGGTGAGCTTGAGCTGCTTCACGGCGGTG
AAGGAGGACTGTTTCCATGGAGAAACAGGGTTTGAGAGCGTTGGGGTGAAGAGAGAAGCTTGTGCAGCCATGGCCATTGAAGATTGTAGATGGATGAAGA
TGGTGAGGTGTTTGTGAGGGTGGGAGATGTAACGAGGGGGGAGGGAAATTAT