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Detailed information on CNT30148662


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 3e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Brachypodium distachyonOryza sativa41.341.5190.57318forward
CNT30678303Brachypodium distachyonSetaria viridis24.8153.6593.72191forward
CNT30522020Brachypodium distachyonSetaria italica36.158.6592.45278forward
CNT30639185Brachypodium distachyonNymphaea colorata27.1448.9578.95209forward
CNT30710333Brachypodium distachyonGlycine max35.8431.7279.35276forward
CNT30299532Brachypodium distachyonTriticum aestivum32.0848.4392.31247forward
CNT30395090Brachypodium distachyonTriticum turgidum41.329.5892.14318forward
CNT30554655Brachypodium distachyonOryza glaberrima41.336.3490.57318forward
CNT30440464Brachypodium distachyonAegilops tauschii41.338.3192.14318forward
CNT30246994Brachypodium distachyonAvena sativa41.8238.5691.93322forward
CNT30665756Brachypodium distachyonTriticum dicoccoides41.344.7992.14318forward
CNT30262Brachypodium distachyonZea mays25.7139.692.42198forward
CNT30344027Brachypodium distachyonEragrostis tef42.9940.9792.15331forward
CNT30361538Brachypodium distachyonSorghum bicolor21.4334.0292.73165forward
CNT30619829Brachypodium distachyonCajanus cajan33.5126.1780.62258forward
CNT30596794Brachypodium distachyonOryza meridionalis37.443.4489.24288forward
CNT30370811Brachypodium distachyonOryza glumipatula41.340.290.57318forward
CNT30577354Brachypodium distachyonOryza barthii41.338.6990.57318forward
CNT30579362Brachypodium distachyonEchinochloa crusgalli40.1335.4492.56309forward
CNT30117312Brachypodium distachyonOryza nivara41.340.3690.57318forward
CNT30113105Brachypodium distachyonFicus carica37.0135.6283.16285forward

Expression of CNT30148662

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MGLRGRAGAGRSRRGLGWRREPPGFLGRRRGGRLGRGRWGKGRRGSGVWGRRKGTGWRLAWPWPWRELA*

>peptide 2 (36 aa)
MLLKFCPTPCLPAFTFSGYTPSLGWRYCTSPLGKTR*

>peptide 3 (32 aa)
MMAAPPVGISNTCSLGDVHEPARAAAEDWGWG*

Sequence

>CNT30148662
ATCATCGCTGAATCCCCATCGTTGAAACTTTAAAATTACAAGTAGTCCATCGATCGATCATCATCATCCCCGCACCCCATCAACTGCTACGTACGGATGA
ACTAATTAACACACGCATGCATGCAAATATACGATGCTTAATTAATTAACACCGATCGATCAGACGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCAA
TCGGGCTAACATTCTTCCCGATGCTCCTGAAATTCTGCCCGACGCCCTGCCTGCCGGCGTTCACCTTCTCCGGGTACACCCCGTCCTTGGGGTGGAGGTA
CTGCACCTCGCCGCTGGGGAAGACGCGGTAGAACTGGTAGGCGATCTTGTACTTGGAGCGGAGCCGGTTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCC
AGCTTGAGGAGGTTGGGCCCCTCACGCATGATGGCGGCGCCGCCCGTCGGCATCTCGAACACCTGCTCCTTGGGCGACGTCCACGAGCCCGCCCGTGCTG
CCGCCGAAGATTGGGGATGGGGTTGAGGGGTCGAGCTGGGGCGGGACGAAGCCGGCGGGGGCTGGGGTGGCGACGGGAGCCGCCGGGGTTTCTGGGGCGG
CGGCGTGGAGGGCGGTTGGGGCGCGGGAGGTGGGGGAAGGGAAGGCGAGGGAGCGGGGTTTGGGGGAGGAGGAAGGGGACCGGGTGGCGGCTTGCGTGGC
CATGGCCATGGCGGGAGCTAGCTTAGCGAGAGCAAGGAGCGCGCGTGTGGGGGATGGATATGGATCGGAG