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Detailed information on CNT30122581


BLAST search results

BLAST vs Swiss-Prot:
sp|P84563|PSAD_POPEU, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695553Physcomitrium patensOryza sativa22.4128.4782.28158forward
CNT30678303Physcomitrium patensSetaria viridis12.3424.4486.2187forward
CNT30639185Physcomitrium patensNymphaea colorata21.9936.382.58155forward
CNT30299761Physcomitrium patensTriticum aestivum12.3422.3787.3687forward
CNT30554655Physcomitrium patensOryza glaberrima22.4118.0682.28158forward
CNT30440643Physcomitrium patensAegilops tauschii33.0548.3480.26233forward
CNT30256262Physcomitrium patensAvena sativa33.0541.9181.12233forward
CNT30664930Physcomitrium patensTriticum dicoccoides9.520.8786.5767forward
CNT30596794Physcomitrium patensOryza meridionalis22.4123.8381.65158forward
CNT30370885Physcomitrium patensOryza glumipatula22.4122.7782.28158forward
CNT30577354Physcomitrium patensOryza barthii22.4119.2282.28158forward
CNT30579362Physcomitrium patensEchinochloa crusgalli20.4316.5182.64144forward
CNT30117312Physcomitrium patensOryza nivara22.4120.0582.28158forward
CNT30113105Physcomitrium patensFicus carica21.561979.61152forward

Expression of CNT30122581

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGAGVSAFNVGGVKPLGASAAASGAAAALATTR*

>peptide 2 (32 aa)
FYPQVSENKYLAQQNCILRLQMTTPPAETLSM*

Sequence

>CNT30122581
ATTTTACCCGCAAGTCTCAGAAAACAAATATCTGGCCCAACAGAACTGTATACTTAGGCTCCAAATGACAACACCTCCAGCTGAAACTCTCTCTATGTGA
GTAGTCAGAAGTGAACTTACGCAAGCAAGAGTCATGCCAGTTTGTCTGCTCTAAGAGAAGCAATGCCGACAGGCGAAGGTCTCAATTGAAATGAAGGAAC
AGGACATTGTAGAAAAATTAGAAAGTTACAACCAAGTGATCCTTCTACTCTACAAGAAAAAGTGATGTCTACAAATCATAAGCTTGCTTTTGGGCAAACT
TGAGCTCCGCAGGGTTTGCATTCTTTCCAATGCTCCTGTTGTTAACTCCTACTGGAGACCTGCCGGCGTTAACCTTCTCAGGGTACACACCATCTTTAGG
GTGAAGGTATTGCACCTCACCGTTGGGGAAGACACGGTAGAACTGATATTGGATTTTGAACTTGGTCCTCAATCTGGCGCCCAAGGCAAGGCACTGCTCC
TTCCTTGCGAGCTTCAATAGGTTAGGTGATGACATAGAACTCCTCAACCTGCGCCTTGCGAAGAAGACCACCCGTGCTACCACCGAAGATGGGAGCGGGG
GTGTCGGCGTTCAATGTTGGCGGGGTAAAACCCTTGGGCGCCTCTGCGGCGGCATCCGGGGCGGCTGCGGCTTTAGCCACCACACGGTGACTATTGCACA
CTGCT