« Back to Triticum turgidum search


Detailed information on CNT30395090


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 8e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Triticum turgidumOryza sativa38.654.1892.05415forward
CNT30678303Triticum turgidumSetaria viridis18.1454.7893.85195forward
CNT30522020Triticum turgidumSetaria italica26.4259.9295.07284forward
CNT30639185Triticum turgidumNymphaea colorata27.2668.6279.52293forward
CNT30710333Triticum turgidumGlycine max28.7435.5281.55309forward
CNT30554655Triticum turgidumOryza glaberrima38.647.4392.05415forward
CNT30440464Triticum turgidumAegilops tauschii53.5869.499.48576forward
CNT30246994Triticum turgidumAvena sativa38.7949.9495.2417forward
CNT30665756Triticum turgidumTriticum dicoccoides49.7775.35100535forward
CNT30446699Triticum turgidumSaccharum spontaneum21.6725.9889.7233forward
CNT3010182Triticum turgidumZea mays24.2833.2592.34261forward
CNT30228866Triticum turgidumAnanas comosus21.2126.0985.09228forward
CNT30344027Triticum turgidumEragrostis tef36.7448.8992.66395forward
CNT30361538Triticum turgidumSorghum bicolor23.7252.5887.84255forward
CNT30619829Triticum turgidumCajanus cajan29.4932.1581.7317forward
CNT30596794Triticum turgidumOryza meridionalis27.2644.1993.17293forward
CNT30370811Triticum turgidumOryza glumipatula38.652.4792.05415forward
CNT30148662Triticum turgidumBrachypodium distachyon29.5841.392.14318forward
CNT30577354Triticum turgidumOryza barthii38.650.4992.05415forward
CNT30579362Triticum turgidumEchinochloa crusgalli38.747.7192.31416forward
CNT30117312Triticum turgidumOryza nivara38.652.6692.05415forward
CNT30113105Triticum turgidumFicus carica27.9137.583300forward

Expression of CNT30395090

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MCRYAHGRARMVWRAAATRRYSDHSPRFIVSRSR

>peptide 2 (37 aa)
EWFKHRMLHLWPKEQKIVYACNKLLLIINIKRSRSCI*

>peptide 3 (50 aa)
MGSADFDTAGVSAPPPHTCAGMRTAGPGWYGVQRPRDDIRITLHGSSSLGP

>peptide 4 (37 aa)
MSKEFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

>peptide 5 (78 aa)
MAELRGTGAWGGGGGGVDKVIWRYEAGQWGVPILIRPVSPHRHHTHVQVCARPGPDGMACSGHATIFGSLSTVHRLSVP

Sequence

>CNT30395090
TGAATGGTTTAAACATCGCATGCTACATCTCTGGCCAAAAGAACAAAAAATAGTGTACGCGTGTAACAAATTACTACTCATCATCAACATAAAAAGAAGC
CGATCATGCATATGAACAACGTTAACATACAGCAGTATCATCATCAAATTACCATGTACATATAACCTGATGCATCATTATCACCGATCGAATCCATCAT
TCAAACTCGACAATTAAAATTACAGGACGTCCATCATCATCGCCACCCGCCAATAACTACCGGTCGATGAACTAGCACGTACGCATATACGACGTACGAG
ATTAGATGTCGAAGGAGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGCCCCACGCCCTGCCTGCCGGC
GTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGGCGATCTTGTACTTGGAG
CGGAGGCGGTTGCCGAGGGCGAGGCACTGCTCCTTGCGGGCGAGCTTGAGGAGGTTGGGCCCCTCGCGCATGATGGCGGCGCCGCCAGTGGGCATCTCGA
AGACCTGCTCCTTGGGGGAGGTCCAGGTGATGACGTAGAACTCCTCGACCTGGGCCTTGCGGAGGAGGCCGCCCGTGCTGCCGCCGAAGATCGGGGACGG
GGTGGACGGGTCCAGCTGCGGCGGCACGAAGCCCGCGGGGGCGGGCTCCGCCGGCGGCGCCGCTGGGGCGGGGGTGTCCGAGGCCACACGCGCGCGCGGG
AGATGGGGTTGTGTCTGGTGGGTGATGAGTAGGAGAGATGGCTGAGCTAAGAGGTACGGGGGCTTGGGGTGGAGGGGGTGGGGGAGTGGATAAGGTGATA
TGGCGATATGAGGCCGGCCAATGGGGAGTGCCGATTTTGATACGGCCGGTGTCTCCGCACCGCCACCACACACATGTGCAGGTATGCGCACGGCCGGGCC
CGGATGGTATGGCGTGCAGCGGCCACGCGACGATATTCGGATCACTCTCCACGGTTCATCGTCTCTCGGTCCCGG