Detailed information on CNT30596514


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387400Oryza meridionalisTriticum turgidum13.8644.0290.5221forward
CNT30554457Oryza meridionalisOryza glaberrima47.2162.792.3753forward
CNT30450549Oryza meridionalisSaccharum spontaneum16.370.2790.38260forward
CNT30680980Oryza meridionalisTriticum urartu18.0654.9689.24288forward
CNT30370789Oryza meridionalisOryza glumipatula46.0853.4294.56735forward
CNT30116951Oryza meridionalisOryza nivara46.0249.6394.14734forward

Expression of CNT30596514

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MISPALFLARFWSSESSSNCRNVLAAAATDDAMAALLLLLLLLRECVGGGEGG

>peptide 2 (58 aa)
DRCTSGCINSSSGVHILQITTMQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 3 (34 aa)
MTSPLSIPSQLARHHKTKPRARTHTNARKRIDPV*

>peptide 4 (34 aa)
MVVWSGSLRRACLISASCSRSFFSGSDANPSGSK*

>peptide 5 (29 aa)
MTSTSIQISVEIENGSGCPRYDDPSTSST*

>peptide 6 (35 aa)
SIDVQVDALIHHRVFIYYKSPPCKSPLTTNPALLI*

>peptide 7 (51 aa)
MYRGVSYTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNTSV*

Sequence

>CNT30596514
TCGATCGATGTACAAGTGGATGCATTAATTCATCATCGGGTGTTCATATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCC
TAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACAC
CAACGCACGCAAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGC
TGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCTAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAG
CCTCTTCTCCGGATCCAGCTCCGCGTTGCGCTGGAACTCGATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGC
TGCCCCAGGTACGACGACCCATCCACCAGCTCCACCTGAAAAACATCATCGGACCATTCCTACGTCAGTGTCATCGTCCTCGTCCGCGGCGGCGGCGACA
TGTGTAGTAATCAGGGTTTTAAATATTCAGCTATAGCTGTTTGAGAAAGATATAGCTATTTGCTCTCATGTACAATCTAGTCGTAGCTGCCACTATTTTG
AGAAGGCTAATCGCTAAATAGTTTAGCCCACTATTTGAAAGTGAGAAATGACCTGGGTTTGAAGTTTTACTCTTTCTAATTATTTGATATTAGGTCATTT
TTTAATGTTTGTGTGTTTTTTTAGCAAATTTCACAAAACTACATGTTTTATGATTTAAGTTGCAGAAAACCACACACATTTTGATACTTGGCACTTAAGT
ACATATATTTTGGTAGTTTAGTTTCACGAAACCACACTATCGATGGATTCACCCGTGAGATGACATGGTTGTTCCATCTAAGATGAGAACGTGACATCCT
ATTAATTTTGTGCGATGGCTGGTAATATGATGCCATGTCTTCGTTCTGGGTGAAACAGTCACGTCATCTCGCGGGTGAATCCATTCATTGATAGTGTGGT
TTCGTGAAACTACGCTACCAAAATATATGTACTTAATTGTCAAGTGTCAAAGTGTGTGTGGTTTTCTGCAACTTAGACCACAAAACGTGTAGTTTTGTGA
AATTTACTCTTTTTTTTTAAACGCTGGTAGTAATGTATAGGGGAGTATCGTATACCTTGCCGGCGTCTTGCCAGGTGACGCCGGTGAGCCACTCGACGGA
GAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTGGAGGCCGAACACCTCGGTGTAGGGCTGGAACGGG
GTGGACTTCACCTCGCCGGTCTCGAACCGGGTGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGA
ACGTGCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGCTCTTCTCCTCCTTCTTCTTCTTCTTCGAGAATGTGTGGGTGGTGGTGAGGGGGGG