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Detailed information on CNT30290500


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 1e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Triticum aestivumSetaria viridis32.7536.6689.35169forward
CNT30387477Triticum aestivumTriticum turgidum90.589.8197.86467forward
CNT30554457Triticum aestivumOryza glaberrima56.0124.0692.04289forward
CNT30244633Triticum aestivumAvena sativa58.7256.0193.4303forward
CNT30659761Triticum aestivumTriticum dicoccoides84.39193.79435forward
CNT30680980Triticum aestivumTriticum urartu100.5899.0594.99519forward
CNT30338967Triticum aestivumEragrostis tef32.7534.6390.53169forward
CNT30370623Triticum aestivumOryza glumipatula56.0120.9192.04289forward
CNT30147796Triticum aestivumBrachypodium distachyon26.9435.0194.96139forward
CNT30102749Triticum aestivumOryza rufipogon42.6431.790.91220forward
CNT30116951Triticum aestivumOryza nivara45.7415.9691.1236forward
CNT30556512Triticum aestivumPanicum hallii28.6830.5290.54148forward
CNT3039307Triticum aestivumMarchantia polymorpha28.2943.9880.82146forward

Expression of CNT30290500

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYPITSTSIQISVVSVNGSGCPRYDDPSTSST

>peptide 2 (40 aa)
MVVCSGSLRKATMARRACLISASCRVSFFSGSAASPSGSK*

>peptide 3 (71 aa)
GCIKLPLVHILQITKSQQLSYVIRPALINKGSVRYPLIHHSSYKTKARSLHGRAFVHFAAELTEIARPPTT*

Sequence

>CNT30290500
GTGGATGCATTAAGTTACCATTGGTTCATATTTTACAAATCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTGT
GCGATACCCTCTCATCCATCACTCGTCATACAAAACCAAAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGCTGCTGAGCTGACAGAAATTGCT
CGACCACCGACCACTTAAGAGGAACCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCT
CCGCCAGCTGCAGAGTCTCCTTCTTCTCCGGGTCCGCCGCGAGCCCCAGCGGGTCGAAGTAGGAGCCACCGGGGTAGAGCCTCCTCTCCGGGTCCAGCTC
CGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCCAGATCAGCGTGGTGAGCGTGAACGGCAGCGGCTGCCCCAGGTACGACGACCCG
TCCACCAGCTCCACCT