Detailed information on CNT30244633


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 8e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Avena sativaSetaria viridis28.6533.6291.61155forward
CNT30290500Avena sativaTriticum aestivum56.0158.7293.4303forward
CNT30387477Avena sativaTriticum turgidum43.9945.7794.12238forward
CNT30554457Avena sativaOryza glaberrima53.624.1590.34290forward
CNT30680980Avena sativaTriticum urartu56.0157.8289.44303forward
CNT30338967Avena sativaEragrostis tef31.2434.6391.72169forward
CNT30370623Avena sativaOryza glumipatula53.620.9890.34290forward
CNT30147796Avena sativaBrachypodium distachyon27.7337.7892150forward
CNT30580706Avena sativaEchinochloa crusgalli54.5346.8389.83295forward
CNT30556512Avena sativaPanicum hallii28.4731.7592.21154forward
CNT3039307Avena sativaMarchantia polymorpha26.4343.0780.42143forward

Expression of CNT30244633

Peptides detected in this lncRNA

>peptide 1 (72 aa)
KIDVQVDALSHHWFIFYKSPSPSSCPRPALIKKGCPSHHSSYKTKPRSYTDYAFVHLAAELTEPYTLLDDRD*

>peptide 2 (60 aa)
MSLSSLVIQNQTTFVHGLRVRPSCSRAYRTVYTARRPRLATDRALKRSPRCRRWWCAAGR*

>peptide 3 (40 aa)
MVVCSGSLRWATMARRACLISASCRVSFFSGSAARPSGSK*

Sequence

>CNT30244633
TCAAGATTGATGTACAGGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCTCCAAGTCCCAGCAGCTGTCCTAGACCTGCATTAATCAAGAA
AGGATGTCCCTCTCATCACTCGTCATACAAAACCAAACCACGTTCGTACACGGACTACGCGTTCGTCCATCTTGCAGCCGAGCTTACAGAACCGTATACA
CTGCTCGACGACCGAGACTAGCGACCGACCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGCGACCATG
GCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGGGTTTCCTTCTTCTCAGGGTCCGCCGCGAGGCCCAGCGGGTCGAAGTAGGAGCCGCCGGGGTACA
GCCGCCTCTCCGGGTCCAGCTCAGCGTTGCGCTGGAACTCGATGTAGCCGATCACCAGCACCTCGATCCAGATGAGCGTCGTGATCGTGAAGGGCAGCGG
CTGACCCAGGTACGACGACCCGTCAATCAGCTCCACCTGCA