CANTATAdb - search

Detailed information on CNT30694831

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 1e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672312	Oryza sativa	Setaria viridis	12.67	37.31	91.86	172	forward
CNT30375654	Oryza sativa	Arabidopsis thaliana	9.87	27.69	82.09	134	forward
CNT30387274	Oryza sativa	Triticum turgidum	15.76	47.77	92.99	214	forward
CNT30236263	Oryza sativa	Brassica oleracea	7.51	20.99	85.29	102	forward
CNT30554457	Oryza sativa	Oryza glaberrima	54.86	62.03	97.32	745	forward
CNT30596639	Oryza sativa	Oryza meridionalis	57.36	47.07	94.35	779	forward
CNT30370623	Oryza sativa	Oryza glumipatula	54.64	53.69	97.84	742	forward
CNT30105722	Oryza sativa	Oryza longistaminata	11.19	53.71	93.42	152	forward
CNT30328621	Oryza sativa	Asparagus officinalis	7.73	35.23	88.57	105	forward
CNT30116951	Oryza sativa	Oryza nivara	50.66	46.52	96.8	688	forward
CNT30556512	Oryza sativa	Panicum hallii	10.16	28.45	94.2	138	forward

Expression of CNT30694831

Peptides detected in this lncRNA

>peptide 1 (30 aa)
GCINSSSWVFLYYKSPPCKSPLTTNPAFLI*

>peptide 2 (29 aa)
MTSTSIQISVEIENGSGCPRYDDPSTSST*

>peptide 3 (42 aa)
MTSPLSIPSQLARHHKTKQRARTHTNASIPFELRAKELKLRG*

>peptide 4 (37 aa)
MQVAINHQPSFPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 5 (56 aa)
MLVVMYGGVSCTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNGSKP*

>peptide 6 (54 aa)
MVVWSGSLRGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDANPSGSK*

Sequence

>CNT30694831
TGGATGCATTAATTCATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTTTCCTAATTTAAGTAGTA
ATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACAGCGCGCGCGAACGCACACCAACGCATCGATCC
CGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGGGCCCCTTGCCGGTGG
CGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGC
CAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTAGCCGATGACGAGCACC
TCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGTACGACGACCCATCCACCAGCTCCACCTGAAAAACACCATCGGACCATTCCT
ACGTCAGTGTCATCATCCTCGTCCGCGGCGCCGGCGATACGTAGTAACCAGGGTTTTAAATCTTTAGCTATAACTATTTAAAAAAAGATGTAGCAATTTG
TTCTCATGTACAATTTAGTCATAGCTGCCACTATTTTGAGAGGCTAAACGCTAAATGTTTTAGCCCGCTAGCTATTTGAAACAATGGTAGTGAGAAACGC
CCAGAGGTTTTTCGGCTATCCCCACGGGCTAGACGACCTGGATTTGAAACCTTACTCTTTCTAATTATTTGATATAATAGGTCATTTTTTAATATTTGCT
TTTTAAAAAAAATGCTGGTAGTAATGTATGGGGGAGTATCGTGTACCTTGCCGGCGTCTTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCC
GAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTGGAGGCCGAACGGGTCGAAGCCGTAGTCGCCGACGAGCGACCCG
TCCAGGTAGTCCGGCGCCACCGCGCCGGGGAACCACAGCGGCCTGTCCGTCGTCGGCGCCGACGGCCTCGCCGCCTTCTTCGCCGCCGCCTTCTTCCCGC
CGCCGAACCCGAACCTCGCCACGATCCTCCCGCTCTGCGGCGCCGGGTCCGCCAGCCTCGTCCCCAGGAACGTGCTCGCCGCCGCTGCCACCGACGACGC
CATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATGTGTGGGTGGTGGTGAGGGG