« Back to Actinidia chinensis search


Detailed information on CNT30562751


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 8e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695194Actinidia chinensisOryza sativa49.7622.3882.61207forward
CNT30500595Actinidia chinensisCoffea canephora32.2117.6181.34134forward
CNT30276136Actinidia chinensisChenopodium quinoa41.8333.7979.31174forward
CNT3020107Actinidia chinensisCitrullus lanatus20.677.5283.7286forward
CNT30526508Actinidia chinensisPhaseolus vulgaris51.6822.2381.4215forward
CNT30386996Actinidia chinensisTriticum turgidum35.126.9981.51146forward
CNT30554457Actinidia chinensisOryza glaberrima35.112.1681.51146forward
CNT30436081Actinidia chinensisAegilops tauschii35.128.5782.88146forward
CNT30453511Actinidia chinensisSaccharum spontaneum49.7639.2883.09207forward
CNT30219415Actinidia chinensisKalanchoe fedtschenkoi34.6246.1580.56144forward
CNT30338974Actinidia chinensisEragrostis tef24.2822.287.13101forward
CNT30620949Actinidia chinensisCajanus cajan48.3218.6882.59201forward
CNT3036109Actinidia chinensisCucumis melo20.678.2883.7286forward
CNT30577064Actinidia chinensisOryza barthii47.3625.7982.23197forward
CNT30581456Actinidia chinensisEchinochloa crusgalli49.763683.09207forward

Expression of CNT30562751

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MVLLRGPLPVTAAWTAKPRNPTMARRACLISASWRVAFFSGSEASPSGSKNLPPGYSRFSSSSSAFLWN

>peptide 2 (87 aa)
MVSRNEKKKSDGKLHFCLNSQISYFYKTQPFIRTSFHLSFKSRGKRNSSRENVVNNGIVEGALAGDGSLDCEAEEPDHGEAGVLDLR*

Sequence

>CNT30562751
ATAAAAACTAATTATTTTAAATATCATATTAATTCCATGATATATGGTTTCTAGAAATGAAAAGAAAAAATCAGATGGCAAATTACATTTCTGCTTAAAC
AGTCAAATATCATATTTTTACAAGACACAACCATTCATTCGTACAAGTTTTCACCTCTCATTCAAGTCAAGGGGCAAACGTAACAGCTCAAGAGAAAACG
TTGTCAATAATGGTATTGTTGAGGGGGCCCTTGCCGGTGACGGCAGCTTGGACTGCGAAGCCGAGGAACCCGACCATGGCGAGGCGGGCGTGCTTGATCT
CCGCTAGCTGGAGGGTGGCCTTCTTCTCAGGGTCGGAGGCCAGCCCCAGTGGGTCGAAGAATTTGCCTCCGGGGTACAGCCGCTTCTCCTCGTCGAGCTC
GGCGTTCCTCTGGAAC