Detailed information on CNT30520631


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 3e-104

BLAST vs NONCODE:
NONBRAT002959, E-value = 2e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387477Setaria italicaTriticum turgidum15.8643.6591.19227forward
CNT30554457Setaria italicaOryza glaberrima20.0623.993.38287forward
CNT3013737Setaria italicaZea mays7.5523.1897.22108forward
CNT30580706Setaria italicaEchinochloa crusgalli21.8749.6891.69313forward

Expression of CNT30520631

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MCSPRRPPTKPWLLLLLLLLGVLRASGGGGVWRGEGSSRGTNKKEFRCYLLRGRSDGPGTDVIYLTAAMGSALSGSYLHGPMDGLLAEGLGTRGGP*

>peptide 2 (56 aa)
MKQFWCTYVYIHTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 3 (49 aa)
MCTSECINSSLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 4 (40 aa)
MVVWSGSLRWATMARRACLISASCSRSFFSGSAARPSGSK*

>peptide 5 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

>peptide 6 (57 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPPPPPGCAESVRWWWCVAWRGLVPGYK*

Sequence

>CNT30520631
GATGTGTACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAAC
AAACTATCGGATCGATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCAC
AGTTAATTAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGG
TCGCTGAGGTGGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCGGCCGCCAGGCCGAGCGGGTCGA
AGTAGGAGCCGCCCGGGTAGAGCCTCTTCTCCGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACGAGCACCTCGATCCAGATGAGTGT
CGAGATGGAGAAGGGCAGCGGCTGCCCCAGGTAGGACGACCCGTCCACAAGCTCAACCTGCCAGCCATCAATAACGTTCAGGTTAGACGCTTGCATAAGG
ATGGAATGAAACAATTTTGGTGCACATATGTATATATACATACCTTGCCGGCGTCCTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAG
GGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGACG
TCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCACGGGCT
TCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCGAGGTAGTCGGGCGCCACCGCGCCGGGGAACCAGAGCGGCCGGTCGGAGAC
CGACGACGTCTTGGCCGCCTTCTTCGGGGCGGCGGTCTTCTTGCCGCCGCCGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCTGGGTCCGCC
AGGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGCTCCTCCTCCTCCTCCTGGGTGTGCTGAGAGCGTCAGGTGGT
GGTGGTGTGTGGCGTGGAGAGGGCTCGTCCCGGGGTACAAATAAGAAAGAGTTCCGGTGCTATCTCCTGCGTGGCAGATCGGACGGCCCTGGGACGGATG
TGATCTATTTGACGGCAGCGATGGGCTCTGCCTTATCCGGGTCTTATCTGCATGGTCCAATGGATGGGCTGCTGGCGGAGGGCCTCGGGACACGTGGAGG
GCCGTGATTGGGAGGAGAGCGTCTGGAGCGC