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Detailed information on CNT30580706


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Echinochloa crusgalliSetaria viridis26.8336.6693.49169forward
CNT30520631Echinochloa crusgalliSetaria italica49.6821.8791.69313forward
CNT30276136Echinochloa crusgalliChenopodium quinoa21.4326.2180.74135forward
CNT30554457Echinochloa crusgalliOryza glaberrima46.6724.4893.2294forward
CNT30244633Echinochloa crusgalliAvena sativa46.8354.5389.83295forward
CNT30132393Echinochloa crusgalliLolium perenne27.6229.6491.38174forward
CNT30680980Echinochloa crusgalliTriticum urartu36.9844.4793.56233forward
CNT30338967Echinochloa crusgalliEragrostis tef26.8334.6393.49169forward
CNT30370623Echinochloa crusgalliOryza glumipatula46.6721.2793.2294forward
CNT30556512Echinochloa crusgalliPanicum hallii24.4431.7593.51154forward

Expression of CNT30580706

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MIDAWIMGRAGLRGSSEGVEDGGVERVAEVCGPVVERACLISASCSRSFFSGSDARPSGSK*

>peptide 2 (34 aa)
MYPITSTSIQISVEIEKGSGCPRYDDPSTSSTCMR

>peptide 3 (48 aa)
VVVVINLLLTKKLTMVHHLKTMCTSECIDSSLVHILQMTKSQQQQLSY*

Sequence

>CNT30580706
GTAGTAGTGGTAATTAACCTTCTTCTAACGAAGAAATTAACCATGGTTCATCACCTCAAGACGATGTGTACAAGTGAATGCATTGATTCATCACTGGTTC
ATATATTACAAATGACCAAGTCCCAGCAGCAGCAGCTCTCCTATTAACGCGCGCGACCTCCATTAACAAAGGACTAGATCGGATCCATCTTCCCATACCC
TCTCACTCAATCATCACAAAATGATTACATCCATCTCCAGCTGATGATAGAGATCACGGTTAATTAATTCAAGAACAGCTGATGATCGACGCATGGATAA
TGGGCCGGGCGGGCTTAAGAGGATCCTCCGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGTGTGGCCCAGTTGTTGAGCGGGCGTGCTT
GATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCCAGGCCCAGCGGGTCGAAGTAGGAGCCGCCCGGGTACAGCCTCTTCTCCGGGTCC
AGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAAGGGCAGCGGCTGCCCCAGGTACGACG
ACCCGTCCACCAGCTCCACCTGCATGCGCC