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Detailed information on CNT30238548


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 6e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045175Brassica oleraceaPrunus dulcis22.6641.780.63191forward
CNT30125939Brassica oleraceaPhyscomitrium patens14.8337.4381.6125forward
CNT30303822Brassica oleraceaTriticum aestivum14.2322.0280.83120forward
CNT30540884Brassica oleraceaBrassica napus90.6387.6197.51764forward
CNT30173588Brassica oleraceaTrifolium pratense25.7421.7281.11217forward
CNT30441391Brassica oleraceaAegilops tauschii14.2322.8680.83120forward
CNT30264666Brassica oleraceaBrassica rapa74.8571.5498.26631forward
CNT30607765Brassica oleraceaGossypium raimondii24.0830.3480.79203forward
CNT30214152Brassica oleraceaHelianthus annuus17.6733.7985.91149forward
CNT30687021Brassica oleraceaTriticum urartu14.2324.5480.83120forward
CNT30359023Brassica oleraceaLactuca sativa46.0373.6281.19388forward
CNT30422640Brassica oleraceaPapaver somniferum9.8520.2987.9583forward
CNT30118654Brassica oleraceaCitrus clementina42.766.9179.17360forward
CNT30329767Brassica oleraceaDioscorea rotundata31.6743.6380.15267forward
CNT30150205Brassica oleraceaBrachypodium distachyon10.5621.1984.2789forward
CNT30725700Brassica oleraceaLupinus angustifolius45.4342.7981.98383forward

Expression of CNT30238548

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDWIRQMIKKVLVWPHTGH*

Sequence

>CNT30238548
TTTTCAAGCACCACAGGCAAATATTCCACAATAATCTTTTAAATATGTAACTGACTTCCTTGGTTATTGGAAAACCCAACTATTAATCCTCGAAGTTTTT
CTTTTTGGCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGTTACAATACGAAGACTGTAGGATACAAGAGAATGAGAGTCCA
ACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACTGGATCCGCCAAATGATCAAGAAGGTTC
TGGTATGGCCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATTGCGAGCATAGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCT
TCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCCACCGGGGTAAGACGGGTCACCCGAACCGGCAAAACCTTTCTCTAAGCCCAA
GAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAATCCTGCAACCTCCGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAA
GGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAGTTGAGGCAGCCTTAATAACAAAGGAAGTCTTCCTCACGGAGACAGCTGGTTTTGTGCCGAATA
TCTGTCTAGCTGTCTGAACAGAGGAGGTAAGTGAAGAAGAGACAAGTGCCTGTGCTGCCATTTTTCGCTCTTTACCTTAACTCTTCTCTTCTGTCACCAA
GAGACGATGATTGTTCAGTAATGGTCTGAAGGGAAGTGTTAAG