CANTATAdb - search

Detailed information on CNT30264123

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 7e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3045175	Brassica rapa	Prunus dulcis	20.94	41.7	80.63	191	forward
CNT30540897	Brassica rapa	Brassica napus	90.79	100	100	828	forward
CNT30173588	Brassica rapa	Trifolium pratense	23.46	21.42	80.84	214	forward
CNT30607765	Brassica rapa	Gossypium raimondii	22.26	30.34	80.3	203	forward
CNT30214152	Brassica rapa	Helianthus annuus	16.01	33.11	84.93	146	forward
CNT30422640	Brassica rapa	Papaver somniferum	9.1	20.29	86.75	83	forward
CNT30329767	Brassica rapa	Dioscorea rotundata	25.33	37.75	81.39	231	forward
CNT30150205	Brassica rapa	Brachypodium distachyon	9.76	21.19	85.39	89	forward

Expression of CNT30264123

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDWIRQMIKKVLVWPHTGY*

Sequence

>CNT30264123
CACAGAAATTCTAATTAAAATTTCTAGCTCTTATATCAAAGGGATGCATGGACTAATGATCTGAAACCACAACATATCTCAGATTTATATTTATTTGAGA
TGAGTACTTTTCAAGCACCACAGGCAAATATTCGACAATAATCTTTTAAATATGTAACTGACTTCCTTGGTGATTGGAAAACCCAACTATTAATCCTAGA
AGTTGTTCTTTTTGGCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGGTACAATACGAAGACTGTAGGATACAAGAGAATGA
GAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAGGACATTGTTGTTGACTGGATCCGCCAAATGATCAAG
AAGGTTCTGGTATGGCCCCACACCGGTTACTAGTCCTTGCACAAAATAGCCTAGGATTGCGAGCATAGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTC
AACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCCCCCGGGGTAAGACGGGTCACCCGAACCGGCAAAACCTTTCTCTA
AGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCTCCGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAG
TGTGGCAGTGTCTGCTGGAATCAAACCAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAGCGAACCGTCCGTTGATGATCTCT
CCGTAGGCTAACCATCTCGGTTCGATGAATCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGAGGGTCGAATCCATAGTCGCCAGGTAAGCTGCAGATTA
ATCACAACATCT