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Detailed information on CNT30540897


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045175Brassica napusPrunus dulcis23.0741.780.63191forward
CNT30264123Brassica napusBrassica rapa10090.79100828forward
CNT30329767Brassica napusDioscorea rotundata27.937.7581.39231forward

Expression of CNT30540897

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDWIRQMIKKVLVWPHTGY*

Sequence

>CNT30540897
CTCAGATTTATATTTATTTGAGATGAGTACTTTTCAAGCACCACAGGCAAATATTCGACAATAATCTTTTAAATATGTAACTGACTTCCTTGGTGATTGG
AAAACCCAACTATTAATCCTAGAAGTTGTTCTTTTTGGCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGGTACAATACGAA
GACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAGGACATTGTTGTTG
ACTGGATCCGCCAAATGATCAAGAAGGTTCTGGTATGGCCCCACACCGGTTACTAGTCCTTGCACAAAATAGCCTAGGATTGCGAGCATAGCCAGTCTAC
CGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCCCCCGGGGTAAGACGGGTCACC
CGAACCGGCAAAACCTTTCTCTAAGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCTCCGGTGCTCAGCAAATCCCATC
AAAGCCATCTCGAGAACAAAGAGTGTGGCAGTGTCTGCTGGAATCAAACCAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAG
CGAACCGTCCGTTGATGATCTCTCCGTAGGCTAACCATCTCGGTTCGATGAATCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGAGGGTCGAATCCATA
GTCGCCAGGTAAGCTGCAGATTAATCAC