Detailed information on CNT30259035


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631052Brassica rapaVigna unguiculata47.327.981.74219forward
CNT30543414Brassica rapaBrassica napus60.48100100280forward
CNT30233657Brassica rapaBrassica oleracea10088.799.14463forward
CNT30718929Brassica rapaMalus domestica golden21.8110.8885.15101forward
CNT3027741Brassica rapaTheobroma cacao42.9845.5479.9199forward
CNT3048728Brassica rapaCucumis sativus17.282183.7580forward

Expression of CNT30259035

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 2 (45 aa)
MIISVELENKECVRVCPVAVCPCRWNHTGLEPGKSSVCRNQTGLS*

>peptide 3 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDCRIQENGKPT*

>peptide 4 (52 aa)
TINPRSCSLWPLFLTKDEYVYTGCYNTKKLMVPRETNKIVGYKRMGNQHKTP*

>peptide 5 (29 aa)
PLILEVVLYGHYFLQKTNMFTQGVTTQRN*

Sequence

>CNT30259035
AACCATTAATCCTAGAAGTTGTTCTTTATGGCCATTATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCA
AGAGAAACAAACAAGATTGTAGGATACAAGAGAATGGGAAACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGAACA
AAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGG
CCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCAAACCTCCCGTTGATGATCTCTCCGTAGGCTAGCCATCTCGGCTCGATGAA
GCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCGAAGTCGCCAGGTAAGCT