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Detailed information on CNT30221336


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 5e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Hordeum vulgareSetaria viridis26.7762.2990.27185forward
CNT30535866Hordeum vulgareEucalyptus grandis17.832.9881.3123forward
CNT30547255Hordeum vulgareIpomoea triloba36.4748.4683.73252forward
CNT30515312Hordeum vulgareJuglans regia25.4711.2580.11176forward
CNT30377797Hordeum vulgareArabidopsis thaliana8.122.1391.0756forward
CNT30266710Hordeum vulgareChenopodium quinoa32.4226.282.14224forward
CNT30524993Hordeum vulgarePhaseolus vulgaris25.4715.3482.39176forward
CNT30710612Hordeum vulgareGlycine max23.8815.9980.61165forward
CNT30181115Hordeum vulgareSecale cereale35.8918.798.39248forward
CNT30289897Hordeum vulgareTriticum aestivum42.9849.6798.32297forward
CNT30386162Hordeum vulgareTriticum turgidum47.3232.8393.27327forward
CNT30436397Hordeum vulgareAegilops tauschii43.9950.9298.36304forward
CNT30244470Hordeum vulgareAvena sativa37.0546.3893.75256forward
CNT30659249Hordeum vulgareTriticum dicoccoides49.6433.297.96343forward
CNT30612678Hordeum vulgareArabis alpina8.6824.6986.6760forward
CNT309111Hordeum vulgareZea mays35.3133.2490.98244forward
CNT30207216Hordeum vulgareHelianthus annuus23.4429.7280.25162forward
CNT30718209Hordeum vulgareMalus domestica golden28.9414.8682200forward
CNT30626592Hordeum vulgareDaucus carota25.4719.9880.68176forward
CNT30681259Hordeum vulgareTriticum urartu50.0748.1297.11346forward
CNT30348024Hordeum vulgareEragrostis tef36.941.3391.76255forward
CNT30368337Hordeum vulgareSorghum bicolor36.938.3591.37255forward
CNT30571093Hordeum vulgareVitis vinifera15.4825.682.24107forward
CNT30704492Hordeum vulgarePrunus avium26.3419.3881.32182forward
CNT30584058Hordeum vulgareEchinochloa crusgalli36.3219.8391.63251forward
CNT30724288Hordeum vulgareLupinus angustifolius26.0515.7181.67180forward

Expression of CNT30221336

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSLVFWKAGGSFFWMPSALTGKESTPPSMVGHWFAVPVPFTSM*

Sequence

>CNT30221336
GTTAAAACGAAGGAAGTGTCACCAAATTTGTGAACATACACATTCATGGGGGATCAATATCATGAGCTGGTGAGCAAGAAATGATAACAGAAGCTAAAAT
ATAAACCGATCACTCTGGTTTTATACTAGATACACACACAAACACATTGTTGCCTCGATTCTTTCCTCTCCACCGACCAACCCACGTATGCATGCACAAA
AGATGAGTATCTTCACTTCTGCTATGCTCTAGTTAGACTCGAGCTGCGCGTACCACACACCCTGGATCTTGACATCCTTGGGCGCCTTGGCGCCGAGGTC
GGTGTCTGACGGCTGCACGCTCTCGAAGACGCCTATCACCTCGCCGCTCTCCGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGAGGAACGGCACG
CGCTCGCCTCCGGGGAGCTGCACTGTGACGGCCGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGCGCCGACCTCGAGCGGGCCTT
CCATCTCGTCAAGGGTGTAAGTGAGACGGGTCATGAGCTTGGTCTTCTGGAAGGCCGGTGGCTCGTTCTTCTGGATGCCCTCGGCCTTGACGGGGAAGGA
GTCGACGCCGCCGTCGATGGTCGGGCACTGGTTCGCGGTGCCGGTACCCTTCACCTCCATGTAGGTCTTGCTCTGGATTTCGTCGAAGGTC