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Detailed information on CNT3074945


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 1e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690240Brassica junceaOryza sativa11.131.484.47103forward
CNT30641283Brassica junceaNymphaea colorata30.9314.6579.79287forward
CNT30374131Brassica junceaArabidopsis thaliana30.2855.9883.99281forward
CNT3021292Brassica junceaCitrullus lanatus15.6221.5882.07145forward
CNT30729011Brassica junceaCorchorus capsularis15.1921.0185.82141forward
CNT30493761Brassica junceaOlea europaea11.7540.8283.49109forward
CNT30222864Brassica junceaHordeum vulgare8.321.7588.3177forward
CNT30564033Brassica junceaActinidia chinensis15.7327.8182.88146forward
CNT30612844Brassica junceaArabis alpina22.3131.2284.06207forward
CNT3014640Brassica junceaZea mays8.9423.5187.9583forward
CNT30479170Brassica junceaArabidopsis halleri26.0857.2183.47242forward
CNT30355687Brassica junceaLactuca sativa18.7526.2879.31174forward
CNT30154837Brassica junceaPrunus persica33.5133.7377.81311forward
CNT3026774Brassica junceaPopulus trichocarpa21.2323.7680.2197forward

Expression of CNT3074945

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KKGLSKDLSFYHSFKQNTNTQNTEKVTQTQTMI*

Sequence

>CNT3074945
AAAAAAGGTTTATCAAAGGATCTTTCATTTTACCACTCTTTTAAACAAAACACAAATACACAGAACACTGAAAAGGTAACACAAACACAAACGATGATAT
GAAAAACTACAGATCCTTAGACTCATCCTTTAGTACTTGTAGTCCTTAACGTGAAGGCTCTCCGCCGCACCTTCACCAAGCTGAGCATCACCTTTGTAAA
CACCAAGCGTAGCCTCAGAGTTAGCCTTGCACCTAACCAAGAACGCCTCTTGCGCCTTCTTCACATTCTCCTCTTTCCCTCCCCAAGTCTTCAACGTGCT
CTGCTGCAACGCCCTCCCAAACGAAAACGACAGCGACCAAGGCTTCTTAGTCTTCAGCTGGTTCATCGCGTTCAGGTTCCTCGTCGCCTCTTCCTCGCTC
TGCCCTCCCGACAAGAACACCACAGCCGGAACAGCCGCAGGCACCGTCCTCTGCAGCGCACGGACAGTATACTCCGCCACCACCTCCGGCGCAACTTTAC
CACTCTCTGACCCTGGAGTCACCATGTTCGGTTTCAGAAGCGTTCCTTCGAGCATCACATGGTGATCGCTCAGGGCCTTGTAGCAAGCTGCTAAGACACG
CTCCGTCACCTCCGCGCACTTCTGAATATCGTGAGAACCGTCAACGAGAATCTCAGGCTCCACGATGGGGACAAGACCGTTCTCCTGACAGATGGCAGCG
TATCTAGCGAGCCCGTAAGCGTTCTCGCGGATGGCTAGCTCTGATGGCTCGGTGGGGCCGATCTTGAGAACCGCACGCCATTTGGCGAAACGAGCACCGG
CCTCGTAGTACTTCTTGCAACGCTCGCCGAGACCGTCGAGAAACGGTGCCCTTGTCGACTTTGATGCCAGGTAAGACTCCTCCTTCCTTCAGAATATCCA
CAAATGGCGTCCCTGTGGAATCAAAAAC