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Detailed information on CNT30558289


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 3e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Panicum halliiSetaria viridis41.7438.8386.12245forward
CNT30517898Panicum halliiJuglans regia60.6539.3480.06356forward
CNT30378101Panicum halliiArabidopsis thaliana27.2618.1481.25160forward
CNT3019808Panicum halliiCitrullus lanatus30.4926.7279.89179forward
CNT30729348Panicum halliiCorchorus capsularis35.0922.7680.58206forward
CNT30381694Panicum halliiManihot esculenta26.9225.4882.28158forward
CNT30402788Panicum halliiBeta vulgaris25.5511.9281.33150forward
CNT30158908Panicum halliiPistacia vera32.0311.5181.38188forward
CNT30187977Panicum halliiSecale cereale32.8826.7384.46193forward
CNT30394033Panicum halliiTriticum turgidum32.8814.2683.42193forward
CNT30566784Panicum halliiActinidia chinensis32.0324.7479.79188forward
CNT30314068Panicum halliiCamelina sativa43.116.6980.63253forward
CNT3082269Panicum halliiBrassica juncea27.2624.6984.38160forward
CNT3013256Panicum halliiZea mays14.6521.9484.8886forward
CNT30606420Panicum halliiGossypium raimondii25.5526.2780.67150forward
CNT30652736Panicum halliiRosa chinensis21.9822.2882.95129forward
CNT30625276Panicum halliiDaucus carota23.349.7481.02137forward
CNT30688537Panicum halliiTriticum urartu17.0443.2985100forward
CNT30477326Panicum halliiArabidopsis halleri34.5822.9681.28203forward
CNT30362691Panicum halliiSorghum bicolor46.1727.482.29271forward
CNT30704690Panicum halliiPrunus avium32.039.2584.57188forward
CNT3055928Panicum halliiAmborella trichopoda30.8320.6282.32181forward
CNT30323609Panicum halliiAsparagus officinalis49.7417.5484.25292forward
CNT30551470Panicum halliiOryza brachyantha55.5474.9482.82326forward
CNT30113681Panicum halliiFicus carica52.4742.3180.52308forward
CNT30724682Panicum halliiLupinus angustifolius20.4448.9884.17120forward

Expression of CNT30558289

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLSGRSSESTTPLTKPSHSGMSSSQLSMMKTRRT*

>peptide 2 (32 aa)
MGFCLLICTHSWVTSLTFFFFLSLPLSSSSTTS

>peptide 3 (58 aa)
LLLEALQERRVLDGLLALAGDVVNVLLPLLHARDVVLERRHLVAAFGGVDLVLLQRLP*

>peptide 4 (48 aa)
MLLSFLRVSKRSKGARRGTKRMALNSSWPSTEKCFTARWSSQSLVSDL*

Sequence

>CNT30558289
CCCTTCTTCTTGAGGCGCTCCAGGAACGGCGAGTTCTCGACGGCCTTCTTGCTCTCGCCGGTGATGTAGTAAATGTCCTTCTGCCCCTCCTTCATGCGCG
TGACGTAGTCCTTGAGCGACGTCATCTCGTCGCCGCTTTTGGTGGAGTGGATCTTGTTCTGCTGCAGCGTCTCCCGTGAGATGTTGAGCGGCAGGTCGTC
GGAGTCGACGACGCCCTTGACGAAGCCGAGCCACTCCGGGATGAGCTCCTCGCAGTTGTCCATGATGAAGACGCGGCGCACGTAGAGCTTGATGTTGTTG
AGCTTCTTGCGGGTGTCGAAGAGGTCGAAGGGCGCGCGGCGGGGCACGAAGAGGATGGCCTTGAACTCAAGCTGGCCCTCCACAGAGAAGTGCTTCACAG
CGAGGTGGTCCTCCCAGTCGTTGGTGAGCGACTTGTAGAAGGAGGCGTACTCCTCGCGCGTGATTTCCTCAGGCTTGCGCAGCCAGATGGGCTTCTGTTT
GTTGATCTGCACCCACTCATGGGTCACCTCCTTAACCTTCTTTTTCTTCTTGTCTTTGCCCTTGTCGTCGTCGTCTACCACCTCCAC