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Detailed information on CNT30551470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001022, E-value = 5e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Oryza brachyanthaSetaria viridis61.1542.1688.72266forward
CNT30517898Oryza brachyanthaJuglans regia62.329.9480.81271forward
CNT30378101Oryza brachyanthaArabidopsis thaliana45.2922.3483.76197forward
CNT3019808Oryza brachyanthaCitrullus lanatus66.4443.1384.78289forward
CNT30729348Oryza brachyanthaCorchorus capsularis69.4333.3781.46302forward
CNT30379140Oryza brachyanthaManihot esculenta82.342.5783.52358forward
CNT30526134Oryza brachyanthaPhaseolus vulgaris81.1555.4283.85353forward
CNT30630919Oryza brachyanthaVigna unguiculata82.0726.882.35357forward
CNT30712340Oryza brachyanthaGlycine max29.8922.6186.92130forward
CNT30158908Oryza brachyanthaPistacia vera52.8714.0883.04230forward
CNT30636154Oryza brachyanthaCapsicum annuum33.5631.684.93146forward
CNT3094731Oryza brachyanthaSolanum tuberosum77.9322.5884.37339forward
CNT30187977Oryza brachyanthaSecale cereale69.6641.9787.13303forward
CNT30394033Oryza brachyanthaTriticum turgidum78.3925.286.8341forward
CNT30566784Oryza brachyanthaActinidia chinensis75.443.1684.76328forward
CNT30510227Oryza brachyanthaSolanum lycopersicum76.3228.3585.54332forward
CNT30145670Oryza brachyanthaMedicago truncatula41.1543.9883.8179forward
CNT30314068Oryza brachyanthaCamelina sativa65.2918.7386.27284forward
CNT3082269Oryza brachyanthaBrassica juncea48.7432.7283.02212forward
CNT30606420Oryza brachyanthaGossypium raimondii65.0649.5683.04283forward
CNT30652736Oryza brachyanthaRosa chinensis21.8416.4187.3795forward
CNT30212755Oryza brachyanthaHelianthus annuus34.2559.1380.54149forward
CNT30625276Oryza brachyanthaDaucus carota65.9820.4184.67287forward
CNT30688537Oryza brachyanthaTriticum urartu22.9943.2994100forward
CNT30477326Oryza brachyanthaArabidopsis halleri75.6337.2283.89329forward
CNT30362691Oryza brachyanthaSorghum bicolor57.0125.0887.9248forward
CNT30704690Oryza brachyanthaPrunus avium72.1815.4586.62314forward
CNT3055928Oryza brachyanthaAmborella trichopoda31.4915.686.13137forward
CNT30318584Oryza brachyanthaAsparagus officinalis82.329.4985.2358forward
CNT30558289Oryza brachyanthaPanicum hallii74.9455.5482.82326forward
CNT30113681Oryza brachyanthaFicus carica62.337.2381.18271forward

Expression of CNT30551470

Peptides detected in this lncRNA

>peptide 1 (36 aa)
REMLSGRSSESTMPFTKLSHSGISSSQLSMMKTRRT*

>peptide 2 (72 aa)
MLHSKVLFPVVCQGLVESSILLLGDLLRLPHPDRLLLVHQVPLMRNLLDLLLFLLLFFLLFINILNLALLGIL

>peptide 3 (86 aa)
GDVERKVLGVNNALHKAQPLRDQLLTIVHDEDTAYVELDVVELLPCIEEVKRCPLRNKENSFELQLTLHRECFTARCSSQSFVRDL*

Sequence

>CNT30551470
CGGGAGATGTTGAGCGGAAGGTCCTCGGAGTCAACAATGCCCTTCACAAAGCTCAGCCACTCAGGGATCAGCTCCTCACAATTGTCCATGATGAAGACAC
GGCGTACGTAGAGCTTGATGTTGTTGAGCTTCTTCCTTGTATCGAAGAGGTCAAACGGTGCCCTCTTAGGAACAAAGAGAATAGCTTTGAACTCCAGCTG
ACCCTCCACAGAGAATGCTTCACAGCAAGGTGCTCTTCCCAGTCGTTTGTCAGGGACTTGTAGAAAGCAGCATACTCCTCCTTGGTGATCTCCTCAGGCT
TCCTCATCCAGATAGGCTTCTGCTTGTTCACCAAGTTCCACTCATGAGAAACCTCCTTGATCTTCTTCTTTTTCTTCTCCTTTTCTTCCTTCTCTTCATC
AACATCCTCAACCTTGCCCTCCTCGGCATCCTTTT