Detailed information on CNT30187977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001022, E-value = 2e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Secale cerealeSetaria viridis29.6433.9192.52214forward
CNT30517898Secale cerealeJuglans regia26.5921.2283.85192forward
CNT3019808Secale cerealeCitrullus lanatus37.124086.57268forward
CNT30729348Secale cerealeCorchorus capsularis37.9530.2880.66274forward
CNT30379140Secale cerealeManihot esculenta38.533.0685.61278forward
CNT30526134Secale cerealePhaseolus vulgaris4146.4784.46296forward
CNT30630919Secale cerealeVigna unguiculata39.3421.3283.45284forward
CNT30712340Secale cerealeGlycine max18.4223.1389.47133forward
CNT30158908Secale cerealePistacia vera30.6113.5379.64221forward
CNT30636154Secale cerealeCapsicum annuum17.3127.0690.4125forward
CNT3094731Secale cerealeSolanum tuberosum37.9518.2587.59274forward
CNT30298225Secale cerealeTriticum aestivum38.7836.689.29280forward
CNT30394033Secale cerealeTriticum turgidum41.8322.3298.34302forward
CNT30566784Secale cerealeActinidia chinensis4138.9584.8296forward
CNT30510227Secale cerealeSolanum lycopersicum37.9523.487.59274forward
CNT30145670Secale cerealeMedicago truncatula23.9642.5186.13173forward
CNT30665102Secale cerealeTriticum dicoccoides36.9864.4993.63267forward
CNT30314068Secale cerealeCamelina sativa4119.5386.82296forward
CNT3082269Secale cerealeBrassica juncea20.2222.5388.36146forward
CNT30606420Secale cerealeGossypium raimondii32.6941.3388.14236forward
CNT30625276Secale cerealeDaucus carota41.2721.1985.23298forward
CNT30688537Secale cerealeTriticum urartu13.341.5690.6296forward
CNT30477326Secale cerealeArabidopsis halleri38.0931.1190.18275forward
CNT30362691Secale cerealeSorghum bicolor28.8121.0388.94208forward
CNT30704690Secale cerealePrunus avium38.9213.8387.19281forward
CNT30318584Secale cerealeAsparagus officinalis39.0623.2386.17282forward
CNT30103103Secale cerealeOryza rufipogon9.2820.5591.0467forward
CNT30558289Secale cerealePanicum hallii26.7332.8884.46193forward
CNT30551470Secale cerealeOryza brachyantha40.4467.1387.33292forward
CNT30113681Secale cerealeFicus carica38.2337.9182.97276forward

Expression of CNT30187977

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSVSFSGASSSSSMLRYSGINSSQLSMMKTRRTYSLMLLAFFLLSKRSKGALLGTNRTALNSS*

>peptide 2 (63 aa)
MLLPVIGQALVESSIFFLVDLLWLPHPDRLLLVDQVPLMRDFLDLLFLLFLLFLLLINILNLAL

>peptide 3 (42 aa)
KRENISKADGSNSREYRNIANTYSRTNNNEMIHEYHKQLNHA*

>peptide 4 (53 aa)
MDIRRRRPSLSRPPPSCSHQHRPPGVACRCRSQAPHRPHQCSGTQGSTPHSCP*

Sequence

>CNT30187977
ATAAAAGGGAAAACATAAGTAAAGCAGATGGAAGCAATAGCAGGGAATATAGAAATATAGCTAACACATATAGTAGAACCAACAATAACGAAATGATCCA
CGAGTACCACAAACAGCTAAACCACGCTTAATGTTTGGCCAGCCAAAAGACAAAACCGATACAGCTAAAACGTGCCAAAACCATCCAACGTCGACACTAA
GATAAAAACAACTAGGCGGTGCAGGGCATGGACATCCGACGACGACGGCCTTCGCTTAGTCGACCTCCTCCATCTTGCTCTCACCAGCATCGTCCTCCAG
GGGTGGCATGTCGGTGTCGTTCTCAGGCGCCTCATCGTCCTCATCAATGCTCAGGTACTCAGGGATCAACTCCTCACAGTTGTCCATGATGAAGACACGG
CGCACGTACAGCTTGATGTTGTTGGCCTTCTTCTTGTTGTCGAAGAGGTCGAAGGGGGCCCTCTTGGGCACAAACAGGACAGCCTTGAACTCAAGCTGAC
CCTCAACAGAGAAGTGCTTGACAGCCAAATGCTCCTCCCAGTCATTGGTCAAGCTCTTGTAGAAAGCAGCATATTCTTCCTTGTTGATCTCCTCTGGCTT
CCTCATCCAGATAGGCTTCTGCTTGTTGACCAAGTTCCACTCATGAGAGACTTCCTTGATCTTCTTTTTCTTCTTTTCCTTCTCTTCCTTCTCCTCATCA
ACATCCTCAACCTTGCCCTCCT