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Detailed information on CNT30606420


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69QQ6|HSP82_ORYSJ, E-value = 4e-68

BLAST vs NONCODE:
NONSTUT001022, E-value = 3e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Gossypium raimondiiSetaria viridis45.0140.7385.21257forward
CNT30517898Gossypium raimondiiJuglans regia29.4218.5680.36168forward
CNT30378101Gossypium raimondiiArabidopsis thaliana45.3629.3784.94259forward
CNT3019808Gossypium raimondiiCitrullus lanatus40.6334.6388.36232forward
CNT30729348Gossypium raimondiiCorchorus capsularis41.3326.0881.78236forward
CNT30379140Gossypium raimondiiManihot esculenta56.3938.2987.27322forward
CNT30526134Gossypium raimondiiPhaseolus vulgaris58.8452.7587.2336forward
CNT30630919Gossypium raimondiiVigna unguiculata57.4424.6287.8328forward
CNT30712340Gossypium raimondiiGlycine max20.8420.787.39119forward
CNT30158908Gossypium raimondiiPistacia vera56.5719.7780.8323forward
CNT30636154Gossypium raimondiiCapsicum annuum32.5740.2685.48186forward
CNT3094731Gossypium raimondiiSolanum tuberosum47.8118.1986.08273forward
CNT30187977Gossypium raimondiiSecale cereale41.3332.6988.14236forward
CNT30394033Gossypium raimondiiTriticum turgidum48.3420.487.32276forward
CNT30566784Gossypium raimondiiActinidia chinensis43.9633.0386.45251forward
CNT30510227Gossypium raimondiiSolanum lycopersicum57.6228.185.41329forward
CNT30145670Gossypium raimondiiMedicago truncatula25.0435.1490.21143forward
CNT30314068Gossypium raimondiiCamelina sativa56.5721.3183.59323forward
CNT3082269Gossypium raimondiiBrassica juncea45.3639.9784.17259forward
CNT30652736Gossypium raimondiiRosa chinensis24.3424.0187.05139forward
CNT30212755Gossypium raimondiiHelianthus annuus33.4575.7979.58191forward
CNT30625276Gossypium raimondiiDaucus carota40.6316.585.34232forward
CNT30688537Gossypium raimondiiTriticum urartu13.3132.993.4276forward
CNT30477326Gossypium raimondiiArabidopsis halleri58.8438.0184.52336forward
CNT30362691Gossypium raimondiiSorghum bicolor43.4325.0885.08248forward
CNT30704690Gossypium raimondiiPrunus avium58.4916.4487.43334forward
CNT3055928Gossypium raimondiiAmborella trichopoda33.821.9886.01193forward
CNT30318584Gossypium raimondiiAsparagus officinalis58.4927.5184.43334forward
CNT30558289Gossypium raimondiiPanicum hallii26.2725.5580.67150forward
CNT30551470Gossypium raimondiiOryza brachyantha49.5665.0683.04283forward
CNT30113681Gossypium raimondiiFicus carica36.0828.379.61206forward

Expression of CNT30606420

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MGFCLFTKDHSCDTSLIFFFFFSSFSFSSSTSSTFPSSSFLSSSSSSSEISFSVV

>peptide 2 (99 aa)
ITFKILFCCNISLEMFKGRSSESTIPLTKLRNSGINSSQLSMIKTRLTYSLMLLGFFLVSKRSKGALLGTKRTALNSSCPSTEKCLTAKCSSQSFVRLL*

Sequence

>CNT30606420
GGATAACCTTCAAGATCTTGTTTTGCTGCAACATTTCTCTTGAGATGTTCAAAGGAAGGTCCTCTGAGTCGACAATACCCTTAACAAAGCTGAGGAATTC
AGGAATCAACTCCTCGCAGTTGTCCATGATAAAGACACGTCTCACATACAGCTTAATGTTGTTGGGCTTCTTCCTTGTGTCAAAGAGATCAAAAGGAGCC
CTCTTGGGGACAAAGAGGACAGCCTTGAACTCAAGTTGCCCCTCAACTGAGAAGTGCTTGACGGCCAAATGCTCTTCCCAGTCATTTGTAAGGCTCTTGT
AGAAAGCAGCATATTCTTCCTTGGTAATCTCCTCAGTCATTTGTAAGGCTCTTGTAGAAAGCAGCATATTCTTCCTTGGTAATCTCCTCAGGCTTCCTCA
TCCAGATGGGCTTCTGTTTGTTCACCAAAGACCACTCGTGCGACACCTCCTTAATCTTCTTCTTTTTCTTTTCTTCCTTCTCTTTCTCCTCATCAACATC
CTCAACTTTCCCTTCTTCGTCCTTCTTATCCTCCTCATCTTCATCATCAGAAATCTCCTTCTCAGTGGTCT