Detailed information on CNT30402788


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378101Beta vulgarisArabidopsis thaliana31.1644.4482.91392forward
CNT3019970Beta vulgarisCitrullus lanatus17.2571.3882.03217forward
CNT30381504Beta vulgarisManihot esculenta34.550.6481.57434forward
CNT30631186Beta vulgarisVigna unguiculata35.5339.4581.88447forward
CNT30711421Beta vulgarisGlycine max14.9465.5185.11188forward
CNT3094731Beta vulgarisSolanum tuberosum27.7423.2583.67349forward
CNT30298225Beta vulgarisTriticum aestivum22.3436.7385.77281forward
CNT30394033Beta vulgarisTriticum turgidum34.2631.8685.15431forward
CNT30560521Beta vulgarisActinidia chinensis26.8747.0182.84338forward
CNT3013256Beta vulgarisZea mays7.1522.9687.7890forward
CNT30477326Beta vulgarisArabidopsis halleri32.4346.1586.03408forward
CNT30362636Beta vulgarisSorghum bicolor30.2940.8485.3381forward
CNT30481150Beta vulgarisChara braunii31.5628.180.6397forward
CNT3055928Beta vulgarisAmborella trichopoda17.0124.3784.58214forward
CNT30103353Beta vulgarisOryza rufipogon21.5426.9984.87271forward
CNT30558289Beta vulgarisPanicum hallii11.9225.5581.33150forward
CNT30724231Beta vulgarisLupinus angustifolius5.5628.239070forward
CNT3049694Beta vulgarisCucumis sativus5.9625.2586.6775forward

Expression of CNT30402788

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MSTSTSPAASSSMLRPSFNILWMRLPKVLGSSRTSFMTLHRPSNFSFDSSLFFFSSSLSSSFRPSLVAETSFFPSNSLS*

>peptide 2 (33 aa)
MKVNIYTRKIPFHPLINIFHIYNKSKCKDSLQC*

Sequence

>CNT30402788
TCAACAGGCAGTAGAAACAACAGTGTATCCTGTTACACCATGGATGACAGATTTTGATCCACTTAATTGACATTGCAAAAAGAACTTGGCAATATAATGA
AAGTTAATATATATACTCGTAAAATACCATTCCACCCATTAATCAACATATTTCACATCTACAACAAATCCAAATGTAAAGACAGTCTTCAATGCTAGTT
ATCCTGTTACAGAAAGCAAGCCCAGGCTTTCGCTTTCGTGTTTCTAGAATTGCAGTCATGGTAAAATCTTGATTTAGTTAACTTAATCATCAGGTCCTAA
AGTTGTAACTTCAAGAATAGAATTCCATACTTGCATACACTTTTACCCAGCAACCAACAATGAATGTAAAAATTGAAAAAAAAAGAGGACAACACAAGGA
TATACGCAAGATAAAGCTATAGATTGATTCATTAAACTGCGCTAACCACTTGTCTTTAGGCAAAAACTAAATAAAATACCCCCAACTACCACTCAAAAAA
ATTCTCATAGTTCCAAAAGAGAACACACTCAACATCAAACGGGGGGAGAAAAGGATAGAGAGTGTATTAAAAAGGACGAATAAAGAACTACTTACTACTA
CTAATCAGTAAAATCAGAAACAACCTAGAAACACCAAGCTTAGTCGACTTCCTCCATCTTGGATTCCTCAGCATCAGCTTCCTCGAGGGCTGGCATGTCA
ACATCGACTTCTCCAGCAGCATCATCATCAATGCTCAGACCAAGCTTCAACATTCTGTGGATGCGGTTGCCGAAGGTGTTAGGGTCATCAAGGACATCCT
TCATGACCTTGCACAGACCCTCAAACTTCTCCTTTGATTCCTCGCTCTTCTTCTTCTCATCCTCGCTTTCATCAAGCTTTAGACCCTCCTTGGTGGCAGA
GACCAGTTTCTTCCCCTCAAACTCCTTGAGCTGACCGACAGCATACTCGTCGATAGCATCAACCATGTACAAAACTTCATAGCCCTTCTTCTTAAGTCTT
TCAAGGAAGGGAGAGTTCTCAACTGCCTTCTTGGTCTCACCAGTGATGTAGAAGATGTCATTCTGGCCCTCCTTCATTCTGGTCACGTAGTCCTTAAGGC
TGGTCATCTCTTCACCGCTCTTGGTGGAGTGGTACCTAAGCAACTCAGCGAGCTTGTTCCTGTTTTGAGTGTCCTCGTGGATACCCAACTTCAAGTTCTT
CGAGAAAGCCTCGTAGAACTTGTTGTAATCATCCTTGTTCTCAGCAATCTCAAAGAAG