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Detailed information on CNT30477326


BLAST search results

BLAST vs Swiss-Prot:
sp|O03986|HS904_ARATH, E-value = 1e-174

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Arabidopsis halleriSetaria viridis30.3242.4785.82268forward
CNT30517898Arabidopsis halleriJuglans regia25.3424.7583.04224forward
CNT30378101Arabidopsis halleriArabidopsis thaliana85.7585.9488.92758forward
CNT30282434Arabidopsis halleriChenopodium quinoa34.0512.2685.71301forward
CNT3019808Arabidopsis halleriCitrullus lanatus28.9638.2183.2256forward
CNT30729348Arabidopsis halleriCorchorus capsularis34.8434.0383.44308forward
CNT30381504Arabidopsis halleriManihot esculenta54.1955.8985.8479forward
CNT30402788Arabidopsis halleriBeta vulgaris46.1532.4386.03408forward
CNT30526134Arabidopsis halleriPhaseolus vulgaris42.9959.6584.21380forward
CNT30631186Arabidopsis halleriVigna unguiculata54.1942.2882.67479forward
CNT30711421Arabidopsis halleriGlycine max20.4863.0788.4181forward
CNT30158908Arabidopsis halleriPistacia vera35.0718.9784.19310forward
CNT30636154Arabidopsis halleriCapsicum annuum20.3638.9683.89180forward
CNT3094731Arabidopsis halleriSolanum tuberosum48.4228.5185.75428forward
CNT30187977Arabidopsis halleriSecale cereale31.1138.0990.18275forward
CNT30298225Arabidopsis halleriTriticum aestivum42.3148.8988.77374forward
CNT30394033Arabidopsis halleriTriticum turgidum53.8535.1888.45476forward
CNT30560521Arabidopsis halleriActinidia chinensis42.6552.4385.15377forward
CNT30510227Arabidopsis halleriSolanum lycopersicum42.5332.1184.57376forward
CNT30554643Arabidopsis halleriOryza glaberrima11.220.8483.8499forward
CNT30145670Arabidopsis halleriMedicago truncatula19.1241.5286.39169forward
CNT30314068Arabidopsis halleriCamelina sativa55.8832.5988.87494forward
CNT3082269Arabidopsis halleriBrassica juncea30.241.286.52267forward
CNT304322Arabidopsis halleriZea mays17.3126.884.97153forward
CNT30606420Arabidopsis halleriGossypium raimondii38.0158.8484.52336forward
CNT30652736Arabidopsis halleriRosa chinensis22.2934.0285.79197forward
CNT30212755Arabidopsis halleriHelianthus annuus28.3999.681.67251forward
CNT30625276Arabidopsis halleriDaucus carota52.8333.2181.8467forward
CNT30688537Arabidopsis halleriTriticum urartu8.3732.0390.5474forward
CNT30352420Arabidopsis halleriEragrostis tef2535.782.81221forward
CNT30362636Arabidopsis halleriSorghum bicolor34.9533.1287.06309forward
CNT30481150Arabidopsis halleriChara braunii42.3126.4781.28374forward
CNT30704690Arabidopsis halleriPrunus avium54.323.6285.21480forward
CNT3055928Arabidopsis halleriAmborella trichopoda22.8523.0183.66202forward
CNT30318584Arabidopsis halleriAsparagus officinalis97.9671.3382.22866forward
CNT30103353Arabidopsis halleriOryza rufipogon40.535.6687.99358forward
CNT30577638Arabidopsis halleriOryza barthii16.0621.9188.73142forward
CNT30558289Arabidopsis halleriPanicum hallii22.9634.5881.28203forward
CNT30551470Arabidopsis halleriOryza brachyantha37.2275.6383.89329forward
CNT30113681Arabidopsis halleriFicus carica3137.6483.21274forward
CNT30724231Arabidopsis halleriLupinus angustifolius7.9228.239070forward

Expression of CNT30477326

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLLPVIAETLVEGSVFLLVDLLRFPHPNRLLLVHKIKL

>peptide 2 (34 aa)
MLRGRSSESTIPFTNPRYSGMISSQLSMMKTRRT*

>peptide 3 (48 aa)
MLLGFFLVSKRSNGALLGTNRTALNSSCPSTEKCLTAKCSSQSLLRLL*

>peptide 4 (76 aa)
AVQPYSPVTRQQGESTTRSETMTFSTLSPKTSLITLHRPSNFSLSSSFFFFSSSVSSSFKPSLVAETSFFPSNSLS*

Sequence

>CNT30477326
GGCAGTCCAGCCGTACTCGCCAGTGACAAGACAGCAGGGTGAGTCAACAACACGGTCAGAGACAATGACCTTCTCAACCTTGTCTCCCAAGACATCCTTG
ATCACCTTGCACAGACCCTCAAACTTCTCCTTGAGTTCTTCCTTCTTTTTCTTCTCGTCCTCTGTTTCCTCGAGTTTCAAACCTTCCTTGGTGGCAGAGA
CAAGTTTCTTTCCCTCAAACTCCTTGAGCTGACCAATGGCGTACTCATCAATGGCATCAACCATGTAAAGGACTTCATATCCCTTCTTCTTGAGCTTCTC
AAGGAAGGGTGAGTTCTCAACAGCCTTCTTGCTCTCACCAGTGATGTAGTAGATGTCATTCTGTCCTTCCTTCATCCTTGTCACATAGTCCTTAAGACTG
GTCAACTCATCTCCACTCTTGGTGGAGTGGTATCGGAGCAACTCAGCAATCTTGGTCCTGTTCTGAGAGTCCTCGTGGATACCCAACTTCAAGTTCTTGC
GGATAACCTTGAGGATCTTGTTCTGCTGAAGAGTTTCTCTGGAGATGTTGAGGGGAAGGTCCTCTGAGTCAACAATACCTTTCACAAATCCAAGGTATTC
AGGAATGATCTCTTCACAGTTGTCCATGATGAAGACACGACGGACATAGAGCTTGATGTTGTTGGGCTTCTTCTTGGTGTCAAAAAGGTCGAATGGGGCC
CTCTTGGGAACAAACAGAACAGCCTTGAACTCAAGCTGTCCCTCAACAGAGAAGTGCTTGACAGCCAAATGCTCCTCCCAGTCATTGCTGAGACTCTTGT
AGAAGGCAGCGTATTCCTCCTTGTTGATCTCCTCAGGTTTCCTCATCCAAATAGGCTTCTGCTTGTTCATAAGATCAAACTCAT