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Detailed information on CNT30314068


BLAST search results

BLAST vs Swiss-Prot:
sp|P51818|HS903_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Camelina sativaSetaria viridis13.1331.5486.93199forward
CNT30517898Camelina sativaJuglans regia30.4150.9480.69461forward
CNT30378101Camelina sativaArabidopsis thaliana17.8130.6196.67270forward
CNT3019808Camelina sativaCitrullus lanatus16.9538.3685.6257forward
CNT30729348Camelina sativaCorchorus capsularis44.5374.5980.44675forward
CNT30379140Camelina sativaManihot esculenta30.8755.6585.9468forward
CNT30402735Camelina sativaBeta vulgaris32.5936.2785.02494forward
CNT30526134Camelina sativaPhaseolus vulgaris30.873.3185.22467forward
CNT30630919Camelina sativaVigna unguiculata51.9159.0881.45787forward
CNT30712340Camelina sativaGlycine max8.4422.2689.06128forward
CNT30158908Camelina sativaPistacia vera48.6845.1779.4738forward
CNT30636154Camelina sativaCapsicum annuum15.0449.3583.77228forward
CNT3094874Camelina sativaSolanum tuberosum21.1139.1283.12320forward
CNT30187977Camelina sativaSecale cereale19.534186.82296forward
CNT30298225Camelina sativaTriticum aestivum13.3926.5487.68203forward
CNT30394033Camelina sativaTriticum turgidum23.4826.3185.67356forward
CNT30560521Camelina sativaActinidia chinensis16.8935.6185.16256forward
CNT30510227Camelina sativaSolanum lycopersicum30.5439.5485.1463forward
CNT30145670Camelina sativaMedicago truncatula9.736.1287.76147forward
CNT30441217Camelina sativaAegilops tauschii25.2651.5582.25383forward
CNT30250974Camelina sativaAvena sativa6.4622.7983.6798forward
CNT3082269Camelina sativaBrassica juncea31.0772.6992.36471forward
CNT304322Camelina sativaZea mays14.3838.1882.11218forward
CNT30606420Camelina sativaGossypium raimondii21.3156.5783.59323forward
CNT30227528Camelina sativaAnanas comosus16.3634.1182.26248forward
CNT30652736Camelina sativaRosa chinensis29.6877.7285.11450forward
CNT30212755Camelina sativaHelianthus annuus12.474.681.91188forward
CNT30625209Camelina sativaDaucus carota24.5455.1187.9372forward
CNT30688537Camelina sativaTriticum urartu6.441.9986.697forward
CNT30352420Camelina sativaEragrostis tef22.6955.5780.23344forward
CNT30477326Camelina sativaArabidopsis halleri24.8742.6590.19377forward
CNT30362691Camelina sativaSorghum bicolor26.3240.3484.96399forward
CNT30481150Camelina sativaChara braunii24.0825.8379.45365forward
CNT30704690Camelina sativaPrunus avium51.6538.5386.08783forward
CNT3055965Camelina sativaAmborella trichopoda13.9824.485.38212forward
CNT30107297Camelina sativaOryza longistaminata8.8429.8485.07134forward
CNT30323609Camelina sativaAsparagus officinalis47.8243.5483.86725forward
CNT30149846Camelina sativaBrachypodium distachyon7.0624.1587.85107forward
CNT30103353Camelina sativaOryza rufipogon26.2539.6482.91398forward
CNT30577638Camelina sativaOryza barthii20.3247.5384.09308forward
CNT30584451Camelina sativaEchinochloa crusgalli13.9839.5580.66212forward
CNT30558289Camelina sativaPanicum hallii16.6943.180.63253forward
CNT30551470Camelina sativaOryza brachyantha18.2763.6885.92277forward
CNT30113681Camelina sativaFicus carica32.1967.0381.56488forward
CNT30724273Camelina sativaLupinus angustifolius10.3627.2684.08157forward

Expression of CNT30314068

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MLLSLKACAFMILSMLAVHPYSPVTRQQGESTTRSETITFSTLSPKTSLITLQSPSNFSLSSSFFFFSSSVSSSFRPSLVAETSFFPSNSLS*

>peptide 2 (66 aa)
MLHSQMLLPIIAQTLVESSVLLLVDFLWLPHPNRLLLVHQIPLVRNLLNLLLFLLLLFLLLINFLNL

>peptide 3 (71 aa)
MLNPSFSILWILLPKVLGSSRLKPEVRRAVSKRRSTRSFTDLSFLSASALFLSSSIMEFSGLISIVFLLDM*

>peptide 4 (48 aa)
MLLGFFLVSKRSKGALLGTKRIALNSSCPSTEKCFTAKCSSQSLLRLL*

>peptide 5 (57 aa)
MHFFTRFLRMTLRILFCCNVSLEMLRGRSSESTIPLTNPRYSGMMSSQLSMMKTRRT*

>peptide 6 (37 aa)
RNYNNKRNTDQKEKSFRRNHNKKKPIRSREKSLNCNI*

Sequence

>CNT30314068
CCGAAATTATAATAACAAGAGAAATACGGATCAAAAAGAAAAAAGTTTCAGACGAAATCATAACAAGAAGAAACCGATAAGAAGTCGAGAAAAATCATTA
AATTGCAATATTTAGTCGACTTCCTCCATCTTGCTACCTTCAGCATCAGCATCATCTTCAAGAAGAGGCATCTCAGCGTCGGCTTCAACGGTATCATCCT
CATCAATGCTCAATCCAAGCTTCAGCATCCTGTGGATTCTGCTTCCGAAAGTGTTGGGCTCATCGAGGCTGAAACCTGAAGTGAGAAGGGCAGTCTCAAA
GAGAAGGAGCACAAGATCTTTCACAGACTTGTCGTTCTTATCCGCATCAGCTCTCTTTCTCAGCTCGTCCATAATGGAATTCTCGGGGTTAATCTCCATC
GTCTTCTTGCTGGACATGTAACCACCCATGCTGCTATCTCTCAAAGCTTGTGCTTTCATGATCCTCTCCATGTTAGCTGTCCACCCATACTCGCCAGTTA
CAAGACAGCAAGGAGAGTCCACAACACGGTCAGAGACAATAACCTTCTCCACCTTGTCTCCCAAAACGTCCTTGATCACTTTGCAGAGTCCCTCAAACTT
CTCCTTGAGCTCTTCTTTCTTCTTCTTCTCGTCTTCGGTCTCTTCCAGTTTCAGACCTTCCTTGGTTGCAGAGACAAGCTTCTTTCCCTCGAATTCCTTG
AGCTGACCAATAGCGTACTCGTCGATCGCATCAACCATGTAAAGGACTTCATATCCCTTCTTCTTGAGCTTCTCGAGGAATGGAGAGTTCTCGACAGCCT
TTTTGCTCTCACCAGTGATGTAGTAGATATCGTCCTGACCTTCCTTCATCCTTGTCACGTAATCCTTGAGACTGGTCAATTCATCACCGCTCTTGGTTGA
GTGGTAGCGGAGCAACTCAGCGAACTTAGTTCTATTTTGAGAGTCCTCGTGGATACCGAGCTTCAAGTTCTTAGAGAAAGCCTCGTAGAACTTGTTGTAG
TCCTCCTTGTTCTCAGCAATCTCAAAGAAGAGCTCAATGCACTTCTTCACAAGGTTCTTGCGGATGACCTTGAGGATCTTGTTCTGCTGCAACGTTTCTC
TCGAGATGTTAAGAGGAAGATCTTCAGAGTCGACAATACCCTTGACGAATCCAAGGTACTCAGGAATGATGTCTTCACAGTTGTCCATGATGAAGACACG
ACGGACATAGAGCTTGATGTTGTTGGGCTTCTTCTTAGTGTCAAAGAGATCGAAAGGAGCTCTCTTGGGAACAAAGAGGATAGCTTTGAACTCAAGCTGT
CCTTCCACAGAGAAATGCTTCACAGCCAAATGCTCCTCCCAATCATTGCTCAGACTCTTGTAGAAAGCAGCGTACTCCTCCTTGTTGATTTCCTCTGGCT
TCCTCATCCAAATAGGCTTCTGCTTGTTCACCAAATCCCACTCGTGAGAAACCTCCTTAATCTTCTTCTTTTTCTTCTCCTCCTTTTCCTTCTCCTCATC
AACTTCCTCAACCTTG