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Detailed information on CNT30378101


BLAST search results

BLAST vs Swiss-Prot:
sp|P51818|HS903_ARATH, E-value = 2e-172

BLAST vs NONCODE:
NONSLYT002404, E-value = 2e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675843Arabidopsis thalianaSetaria viridis16.2133.9789.51143forward
CNT30282434Arabidopsis thalianaChenopodium quinoa24.728.8884.86218forward
CNT3019970Arabidopsis thalianaCitrullus lanatus21.8863.4987.56193forward
CNT30729348Arabidopsis thalianaCorchorus capsularis24.8324.284.02219forward
CNT30381504Arabidopsis thalianaManihot esculenta36.7337.8184.88324forward
CNT30402788Arabidopsis thalianaBeta vulgaris36.2825.4484.38320forward
CNT30526134Arabidopsis thalianaPhaseolus vulgaris30.3942.0785.45268forward
CNT30630919Arabidopsis thalianaVigna unguiculata30.2720.0583.15267forward
CNT30711421Arabidopsis thalianaGlycine max20.2962.3784.92179forward
CNT30158908Arabidopsis thalianaPistacia vera32.0917.3281.27283forward
CNT30636154Arabidopsis thalianaCapsicum annuum20.4138.9683.33180forward
CNT3094874Arabidopsis thalianaSolanum tuberosum30.2732.6484.64267forward
CNT30187559Arabidopsis thalianaSecale cereale19.2725.4987.65170forward
CNT30305074Arabidopsis thalianaTriticum aestivum35.7150.2484.13315forward
CNT30394033Arabidopsis thalianaTriticum turgidum37.9824.7686.87335forward
CNT30560521Arabidopsis thalianaActinidia chinensis32.3139.6483.51285forward
CNT30510227Arabidopsis thalianaSolanum lycopersicum30.2722.884.64267forward
CNT30145670Arabidopsis thalianaMedicago truncatula13.4929.2489.08119forward
CNT30441217Arabidopsis thalianaAegilops tauschii24.7229.3486.24218forward
CNT30314068Arabidopsis thalianaCamelina sativa30.6117.8196.67270forward
CNT3082269Arabidopsis thalianaBrassica juncea30.6141.6793.33270forward
CNT304322Arabidopsis thalianaZea mays24.7238.1885.32218forward
CNT30606420Arabidopsis thalianaGossypium raimondii29.3745.3684.94259forward
CNT30652736Arabidopsis thalianaRosa chinensis24.3837.1386.98215forward
CNT30212755Arabidopsis thalianaHelianthus annuus24.0484.1382.55212forward
CNT30625209Arabidopsis thalianaDaucus carota30.3939.788.43268forward
CNT30688537Arabidopsis thalianaTriticum urartu11.1142.4285.7198forward
CNT30352420Arabidopsis thalianaEragrostis tef24.3834.7382.33215forward
CNT30477326Arabidopsis thalianaArabidopsis halleri66.5566.488.93587forward
CNT30362217Arabidopsis thalianaSorghum bicolor40.4868.2682.91357forward
CNT30481150Arabidopsis thalianaChara braunii24.7215.4382.11218forward
CNT30704690Arabidopsis thalianaPrunus avium37.9816.4987.16335forward
CNT3055965Arabidopsis thalianaAmborella trichopoda24.0424.485.85212forward
CNT30318584Arabidopsis thalianaAsparagus officinalis64.5146.8784.01569forward
CNT30149846Arabidopsis thalianaBrachypodium distachyon11.2222.3583.8499forward
CNT30103353Arabidopsis thalianaOryza rufipogon20.5218.0388.4181forward
CNT30577638Arabidopsis thalianaOryza barthii25.7435.0385.02227forward
CNT30558289Arabidopsis thalianaPanicum hallii18.1427.2681.25160forward
CNT30551470Arabidopsis thalianaOryza brachyantha22.3445.2983.76197forward
CNT30113681Arabidopsis thalianaFicus carica29.4835.7182.69260forward
CNT30724231Arabidopsis thalianaLupinus angustifolius7.9428.2385.7170forward

Expression of CNT30378101

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MILSMFAVQPYSPVTRQQGESTTRSETITFSTLSPKTSLITLQSPSNFSLSSSFFFFSSSVSSSFRPSLVAETSFFPSNSLS*

>peptide 2 (53 aa)
FHDPLHVCILWVNLHCLLARHVATHAAVSQGLSFHDPLHVCSPAILACYKTAG*

>peptide 3 (34 aa)
MLLGFFLVSKRSKGALLGTKRIALNSSCPSTEKCF

>peptide 4 (48 aa)
MTLRILFCCNVSLEMLRGRSSESTIPLTNPRYSGMMSSQLSMMKTRRT*

Sequence

>CNT30378101
GCTTTCATGATCCTCTCCATGTTTGCATTCTCTGGGTTAATCTCCATTGTCTTCTTGCTCGACATGTAGCCACCCATGCTGCTGTCTCTCAAGGCTTGAG
CTTTCATGATCCTCTCCATGTTTGCAGTCCAGCCATACTCGCCTGTTACAAGACAGCAGGGTGAGTCCACAACACGGTCAGAGACGATAACCTTCTCAAC
CTTGTCTCCCAAAACGTCCTTGATCACTTTGCAGAGTCCCTCAAACTTCTCCTTGAGCTCTTCTTTCTTCTTCTTCTCGTCTTCAGTCTCATCCAGTTTC
AGACCTTCCTTGGTTGCAGAGACAAGCTTCTTTCCTTCGAATTCCTTGAGCTGACCAATAGCATACTCATCGATAGCGTCAACCATGTAGAGAACTTCAA
TACCCTTCTTCTTGAGCTTCTCAAGGAATGGAGAGTTCTCAACAGCCTTCTTGCTCTCACCAGTGATATAGAAGATATCGTTCTGACCTTCCTTCATCCT
TGTCACGTAGTCCTTGAGACTGGTCAATTCATCACCGCTCTTGGTTGAGTGGTAACGGAGCAACTCAGCAATCTTGGTTCTGTTTTGGGAGTCCTCATGG
ATACCGAGCTTCAGGTTCTTGCGGATGACCTTGAGGATCTTGTTCTGCTGCAATGTTTCTCTTGAGATGTTGAGAGGAAGATCTTCAGAGTCAACAATAC
CCTTGACAAACCCAAGGTACTCAGGAATGATGTCTTCACAGTTGTCCATGATGAAGACACGACGGACATAGAGCTTGATGTTGTTGGGCTTCTTCTTAGT
GTCAAAGAGATCAAAAGGAGCTCTCTTGGGAACAAAGAGGATAGCTTTGAACTCAAGCTGTCCTTCAACTGAGAAATGCTTC