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Detailed information on CNT3082269


BLAST search results

BLAST vs Swiss-Prot:
sp|P55737|HS902_ARATH, E-value = 2e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Brassica junceaSetaria viridis33.3334.2385.65216forward
CNT30517898Brassica junceaJuglans regia54.4839.0179.04353forward
CNT30378101Brassica junceaArabidopsis thaliana41.6730.6193.33270forward
CNT3019808Brassica junceaCitrullus lanatus22.5321.7988.36146forward
CNT30729348Brassica junceaCorchorus capsularis54.6339.1281.36354forward
CNT30379140Brassica junceaManihot esculenta54.4841.9784.14353forward
CNT30402735Brassica junceaBeta vulgaris45.9921.8885.23298forward
CNT30526134Brassica junceaPhaseolus vulgaris60.0361.0784.32389forward
CNT30630923Brassica junceaVigna unguiculata71.1432.4483.3461forward
CNT30711421Brassica junceaGlycine max13.8931.3684.4490forward
CNT30158908Brassica junceaPistacia vera54.4821.679.32353forward
CNT30636154Brassica junceaCapsicum annuum35.1949.3582.89228forward
CNT3094874Brassica junceaSolanum tuberosum46.336.6784300forward
CNT30187977Brassica junceaSecale cereale22.5320.2288.36146forward
CNT30305074Brassica junceaTriticum aestivum19.7520.4181.25128forward
CNT30394033Brassica junceaTriticum turgidum22.5310.7986.99146forward
CNT30560521Brassica junceaActinidia chinensis39.3535.4783.92255forward
CNT30510227Brassica junceaSolanum lycopersicum54.1729.9784.9351forward
CNT30145670Brassica junceaMedicago truncatula18.3629.2489.08119forward
CNT30314068Brassica junceaCamelina sativa72.6931.0792.36471forward
CNT30606420Brassica junceaGossypium raimondii39.9745.3684.17259forward
CNT30652736Brassica junceaRosa chinensis54.9461.4983.99356forward
CNT30212676Brassica junceaHelianthus annuus31.7958.0380.58206forward
CNT30625209Brassica junceaDaucus carota72.6969.7885.35471forward
CNT30688537Brassica junceaTriticum urartu15.1242.4286.7398forward
CNT30477326Brassica junceaArabidopsis halleri41.230.286.52267forward
CNT30362691Brassica junceaSorghum bicolor54.6335.7985.31354forward
CNT30704690Brassica junceaPrunus avium72.6923.1884.93471forward
CNT3055928Brassica junceaAmborella trichopoda31.7923.4681.55206forward
CNT30323609Brassica junceaAsparagus officinalis72.6928.2984.71471forward
CNT30558289Brassica junceaPanicum hallii24.6927.2684.38160forward
CNT30551470Brassica junceaOryza brachyantha32.7248.7483.02212forward
CNT30113681Brassica junceaFicus carica58.6452.281.05380forward
CNT30724682Brassica junceaLupinus angustifolius10.1926.9489.3966forward

Expression of CNT3082269

Peptides detected in this lncRNA

>peptide 1 (83 aa)
CHVVLEASQIIAALGRVVTEQLSDLGSVLRVLVDTELQILRESFVELVVVLLVLSNLKEELKALLHEVLADDLKDLVLLQRLS*

>peptide 2 (60 aa)
MLPHPDRLLLVHQIPLVRNLLNLLLFLLLFFFLLIYFLNLSLLVLLFLLILVIANLLLNGL

>peptide 3 (48 aa)
MTLRILFCCNVSLEMLRGRSSESTIPLTKPSHSGMMSSQLSMMKTRRT*

Sequence

>CNT3082269
CTTGTCACGTAGTCCTTGAGGCTAGTCAGATCATCGCCGCTCTTGGTCGAGTGGTAACGGAGCAACTCAGCGATCTTGGTTCTGTTCTGAGAGTCCTCGT
GGATACCGAGCTTCAGATTCTTAGAGAAAGCTTCGTAGAACTTGTTGTAGTCCTCCTTGTTCTCAGCAACCTCAAAGAAGAGCTCAAGGCACTTCTTCAC
GAGGTTCTTGCGGATGACCTTAAGGATCTTGTTCTGCTGCAACGTCTCTCTTGAGATGTTAAGAGGAAGATCTTCAGAGTCGACAATACCCTTGACAAAG
CCTAGCCACTCGGGAATGATGTCTTCACAGTTGTCCATGATGAAGACACGACGGACGTAGAGCTTGATGTTGTTAGGCTTCTTCTTGGTGTCAAAGAGAT
CAAAAGGAGCTCTCTTGGGAACAAAGAGGACAGCCTTGAACTCGAGCTGACCTTCAACAGAGAAATGCTTCCTCATCCAGATAGGCTTCTGCTTGTTCAC
CAAATCCCACTCGTGAGAAACCTCCTTAATCTTCTTCTTTTTCTTCTCCTCTTTTTCTTTCTCCTCATCTACTTCCTCAACCTTTCCCTCCTCGTCCTTC
TTTTCCTCCTCATCCTCGTCATCGCTAATCTCCTTCTCAATGGTCTTC