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Detailed information on CNT3055928


BLAST search results

BLAST vs Swiss-Prot:
sp|P36182|HSP82_TOBAC, E-value = 2e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Amborella trichopodaSetaria viridis15.621.7186.86137forward
CNT30517898Amborella trichopodaJuglans regia23.4622.7681.55206forward
CNT30729348Amborella trichopodaCorchorus capsularis20.3919.7884.92179forward
CNT30381504Amborella trichopodaManihot esculenta24.7225.3284.33217forward
CNT30402788Amborella trichopodaBeta vulgaris24.3717.0184.58214forward
CNT30526134Amborella trichopodaPhaseolus vulgaris23.3532.1883.9205forward
CNT30711421Amborella trichopodaGlycine max8.4325.7887.8474forward
CNT30158908Amborella trichopodaPistacia vera22.6712.1881.91199forward
CNT30636154Amborella trichopodaCapsicum annuum20.8439.6183.61183forward
CNT3094874Amborella trichopodaSolanum tuberosum21.9823.5982.9193forward
CNT30305074Amborella trichopodaTriticum aestivum22.4431.4286.29197forward
CNT30394033Amborella trichopodaTriticum turgidum25.0616.2688.18220forward
CNT30560521Amborella trichopodaActinidia chinensis17.7721.784.62156forward
CNT30510227Amborella trichopodaSolanum lycopersicum21.9816.4882.38193forward
CNT3082269Amborella trichopodaBrassica juncea23.4631.7981.55206forward
CNT3013256Amborella trichopodaZea mays10.1422.787.6489forward
CNT30606420Amborella trichopodaGossypium raimondii21.9833.886.01193forward
CNT30652736Amborella trichopodaRosa chinensis25.1738.1787.33221forward
CNT30212755Amborella trichopodaHelianthus annuus21.0773.4182.16185forward
CNT30625209Amborella trichopodaDaucus carota23.0129.9383.17202forward
CNT30688537Amborella trichopodaTriticum urartu9.1134.6387.580forward
CNT30477326Amborella trichopodaArabidopsis halleri23.0122.8583.66202forward
CNT30362217Amborella trichopodaSorghum bicolor22.5537.8686.36198forward
CNT30704690Amborella trichopodaPrunus avium25.0610.8385.91220forward
CNT30318584Amborella trichopodaAsparagus officinalis22.5516.3185.35198forward
CNT30558289Amborella trichopodaPanicum hallii20.6230.8382.32181forward
CNT30551470Amborella trichopodaOryza brachyantha15.631.4986.13137forward
CNT30724682Amborella trichopodaLupinus angustifolius21.5377.1481.48189forward

Expression of CNT3055928

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MLQYLKVIKIKKQNARASKMRPATTSLVDLLHLAALSINIFKRRVLNCLLALSSDVVDLALAFLHPGDIVLKACHFIPALGGVVPQQVSKL*

>peptide 2 (84 aa)
MDAELDVLGEGLVEFVVVLPDHLQDLVLLKHLSGDVQWEVLRVHNSLHEAKVLGDQLLTVVHDEDTPHIKLDVVELLPGVKEIER

>peptide 3 (60 aa)
QLKLLLYHCILRVVILLKQQVEEGIPSSHQRNGEYFKVANTKRTHNWKLRNIYSLSKQTY*

>peptide 4 (44 aa)
TEAFIVSLYLKSCNFVETASGRGHPILAPEKWRIFQGRKYKENA*

>peptide 5 (34 aa)
MFNGRSSESTIPFTKLRYSGINSSQLSMMKTRLT*

>peptide 6 (33 aa)
MANISRSQIQRERIIGNSETYIHCQSKPTKTKT*

Sequence

>CNT3055928
CAACTGAAGCTTTTATTGTATCATTGTATCTTAAGAGTTGTAATTTTGTTGAAACAGCAAGTGGAAGAGGGCATCCCATCCTCGCACCAGAGAAATGGCG
AATATTTCAAGGTCGCAAATACAAAGAGAACGCATAATTGGAAACTCAGAAACATATATTCATTGTCAAAGCAAACCTACTAAAACCAAAACATGAGTTC
TACCGAAATATCTCAAAATCAGGTCCACATTAGGGAGAAATAAAATGAGTCATAAACTGAAACTACCACGTCTAAAGCTATAATTATCATCAAAATTAAA
GCAATATTCCAGGAATCCGTTTTACCCATGCTTCAGTATTTAAAAGTAATAAAAATAAAAAAGCAAAACGCAAGAGCAAGCAAAATGCGTCCAGCCACCA
CAAGTTTAGTCGACCTCCTCCATCTTGCTGCCCTCAGCATCAATATCTTCAAGAGGAGAGTTCTCAACTGCCTTCTTGCTCTCTCCAGTGATGTAGTAGA
TCTCGCTCTGGCCTTCCTTCATCCTGGTGACATAGTCCTTAAGGCTTGTCATTTCATCCCCGCTCTTGGTGGAGTGGTACCTCAGCAGGTCAGCAAGCTT
TGACCTGTTCTGTGTGTCCTCATGGATGCCGAGCTTGATGTTCTTGGAGAAGGACTCGTAGAATTTGTCGTAGTTCTTCCTGATCACCTTCAGGATCTTG
TTCTGCTGAAGCATCTCTCGGGAGATGTTCAATGGGAGGTCCTCCGAGTCCACAATTCCCTTCACGAAGCTAAGGTACTCGGGGATCAACTCCTCACAGT
TGTCCATGATGAAGACACGCCTCACATAAAGCTTGATGTTGTTGAGCTTCTTCCTGGTGTCAAAGAGATCGAAAGGAG