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Detailed information on CNT30729348


BLAST search results

BLAST vs Swiss-Prot:
sp|P51819|HSP83_IPONI, E-value = 5e-169

BLAST vs NONCODE:
NONMEST000006, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Corchorus capsularisOryza sativa11.3825.6983.5103forward
CNT30675624Corchorus capsularisSetaria viridis20.1128.8484.62182forward
CNT30517898Corchorus capsularisJuglans regia52.2752.2783.51473forward
CNT30378101Corchorus capsularisArabidopsis thaliana24.224.8384.02219forward
CNT3019808Corchorus capsularisCitrullus lanatus28.0737.9181.1254forward
CNT30381694Corchorus capsularisManihot esculenta56.5782.5882.42512forward
CNT30402735Corchorus capsularisBeta vulgaris43.652979.49395forward
CNT30526134Corchorus capsularisPhaseolus vulgaris49.6170.4978.84449forward
CNT30630923Corchorus capsularisVigna unguiculata67.1842.7980.1608forward
CNT30712340Corchorus capsularisGlycine max35.856.3580.25324forward
CNT30158908Corchorus capsularisPistacia vera10055.3985.08905forward
CNT30636154Corchorus capsularisCapsicum annuum17.4634.281.65158forward
CNT3094731Corchorus capsularisSolanum tuberosum20.1112.1386.81182forward
CNT30187977Corchorus capsularisSecale cereale30.2837.9580.66274forward
CNT30305074Corchorus capsularisTriticum aestivum15.822.8184.62143forward
CNT30394033Corchorus capsularisTriticum turgidum30.2820.2580.66274forward
CNT30566784Corchorus capsularisActinidia chinensis24.4229.0882.35221forward
CNT30510227Corchorus capsularisSolanum lycopersicum56.3543.5579.22510forward
CNT30145670Corchorus capsularisMedicago truncatula18.7841.7784.12170forward
CNT30314068Corchorus capsularisCamelina sativa74.5944.5380.44675forward
CNT3082269Corchorus capsularisBrassica juncea39.1254.6381.36354forward
CNT30606420Corchorus capsularisGossypium raimondii26.0841.3381.78236forward
CNT30652736Corchorus capsularisRosa chinensis43.3167.781.38392forward
CNT30212676Corchorus capsularisHelianthus annuus37.996.6283.97343forward
CNT30624770Corchorus capsularisDaucus carota37.0253.0184.18335forward
CNT30477326Corchorus capsularisArabidopsis halleri34.0334.8483.44308forward
CNT30362691Corchorus capsularisSorghum bicolor42.138.5282.94381forward
CNT30704690Corchorus capsularisPrunus avium96.4642.9680.53873forward
CNT3055928Corchorus capsularisAmborella trichopoda19.7820.3984.92179forward
CNT3022206Corchorus capsularisPopulus trichocarpa12.0420.0484.4109forward
CNT30323609Corchorus capsularisAsparagus officinalis70.8338.579.88641forward
CNT30103468Corchorus capsularisOryza rufipogon11.7120.2783.02106forward
CNT30558289Corchorus capsularisPanicum hallii22.7635.0980.58206forward
CNT30551470Corchorus capsularisOryza brachyantha33.3769.4381.46302forward
CNT30113681Corchorus capsularisFicus carica78.0196.9885.27706forward
CNT30724682Corchorus capsularisLupinus angustifolius23.8788.1682.41216forward

Expression of CNT30729348

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLFNFFLVSKRSNGALFGTKRIALNSSCPSTEKCFTAR*

>peptide 2 (48 aa)
MIFPVIGETLIEGCIFLLCNLLWLSQPNWFLLVDKLPLMGHLFNLLLL*

>peptide 3 (57 aa)
MHFFTRFFLITLRILFCCSISREMFSGRSSESTTPFTNDRYSGMSSSQLSMMNTLLT*

Sequence

>CNT30729348
TCCCTTCTTCTTGAGTCTCTCAAGGAATGGTGAATTCTCGACGGCTTTCTTGCTCTCACCGGTAATGTAGTAGATATCTTTCTGGCCTTCCTTCATCCTA
GTGACATAGTCTTTCAAGCTGGTCATCTCATCACCGCTCTTGGTTGAATAATACCTAAGCAAGTCAGCAAGCTTTGACCTGTTCTGGCTATCTTCATGAA
TGCCCAACTTGATGTTCTTTGAGAAAGCTTCATAGAACTTGGTGTAGTCCTCTTTGTTTTCAGCTATCTCGAAGAACATCTCAATGCATTTCTTCACCAG
GTTCTTTCTTATCACCTTAAGAATTTTGTTCTGTTGCAGCATTTCACGAGAGATGTTCAGTGGGAGATCATCAGAGTCAACAACACCCTTCACAAATGAC
AGATACTCAGGAATGAGCTCTTCACAATTGTCCATGATGAATACCCTCCTAACATAGAGCTTGATGTTGTTCAATTTCTTCCTTGTGTCAAAGAGATCAA
ATGGGGCTCTCTTTGGCACAAAGAGAATAGCCTTGAACTCAAGCTGTCCTTCAACAGAAAAGTGCTTCACAGCAAGATGATCTTCCCAGTCATTGGTGAG
ACTCTTATAGAAGGATGCATATTCCTCCTTTGTAATCTCCTCTGGCTTTCTCAACCAAATTGGTTTCTGCTTGTTGATAAGTTGCCACTCATGGGTCACC
TCTTTAACCTTCTTCTTCTTTGATTTCTTTTCTTTGTCCTCATCAACATCTTCCACATCCCCTTCCTCATCCTTCTTGGTTTCCTCATCTTCATCGTCAC
TGACCTCCTTTTCAGTAGTCTTCTCAGTCCATAGGTAAATTGGATAGCTGATAAACTCAGAATGCTTCTTCACAAGGTCTTTTATCCTCCTCTCCTCCAA
GTACT