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Detailed information on CNT30394033


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 0.0

BLAST vs NONCODE:
NONSLYT002404, E-value = 3e-158

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Triticum turgidumOryza sativa10.220.0688.41138forward
CNT30675624Triticum turgidumSetaria viridis18.6339.9490.87252forward
CNT30517898Triticum turgidumJuglans regia15.9623.8783.33216forward
CNT30378101Triticum turgidumArabidopsis thaliana43.967.3586.36594forward
CNT30282434Triticum turgidumChenopodium quinoa29.4216.2186.68398forward
CNT3019808Triticum turgidumCitrullus lanatus19.814086.94268forward
CNT30729348Triticum turgidumCorchorus capsularis20.2530.2880.66274forward
CNT30381504Triticum turgidumManihot esculenta62.0197.984.98839forward
CNT30402788Triticum turgidumBeta vulgaris31.8634.2685.15431forward
CNT30526134Triticum turgidumPhaseolus vulgaris24.3951.8184.85330forward
CNT30631186Triticum turgidumVigna unguiculata45.0853.8483.61610forward
CNT30711421Triticum turgidumGlycine max13.8265.1687.17187forward
CNT30158908Triticum turgidumPistacia vera20.116.6580.51272forward
CNT30636154Triticum turgidumCapsicum annuum9.2427.0691.2125forward
CNT3094731Triticum turgidumSolanum tuberosum36.8133.1885.74498forward
CNT30187977Triticum turgidumSecale cereale22.3241.8398.34302forward
CNT30298345Triticum turgidumTriticum aestivum52.92101.798.18716forward
CNT30224612Triticum turgidumHordeum vulgare20.6949.393.93280forward
CNT30560521Triticum turgidumActinidia chinensis34.4464.8183.26466forward
CNT30510227Triticum turgidumSolanum lycopersicum23.2126.8187.26314forward
CNT30554643Triticum turgidumOryza glaberrima7.3220.8488.8999forward
CNT30145670Triticum turgidumMedicago truncatula12.7942.5186.71173forward
CNT30441217Triticum turgidumAegilops tauschii18.734.0597.23253forward
CNT30665102Triticum turgidumTriticum dicoccoides19.7364.49100267forward
CNT30314068Triticum turgidumCamelina sativa46.2741.2985.62626forward
CNT3082269Triticum turgidumBrassica juncea10.7922.5386.99146forward
CNT304322Triticum turgidumZea mays18.744.3189.72253forward
CNT30606420Triticum turgidumGossypium raimondii20.448.3487.32276forward
CNT30227528Triticum turgidumAnanas comosus11.5321.4689.74156forward
CNT30652736Triticum turgidumRosa chinensis18.3342.8386.69248forward
CNT30212676Triticum turgidumHelianthus annuus14.2654.3780.31193forward
CNT30126131Triticum turgidumCorymbia citriodora11.3126.7583.01153forward
CNT30625469Triticum turgidumDaucus carota46.2741.8481.47626forward
CNT30688537Triticum turgidumTriticum urartu7.141.5691.6796forward
CNT30721901Triticum turgidumTriticum spelta21.2156.2789.9287forward
CNT30352420Triticum turgidumEragrostis tef23.852.0289.75322forward
CNT30477326Triticum turgidumArabidopsis halleri35.1853.8588.45476forward
CNT30362636Triticum turgidumSorghum bicolor23.1333.5592.01313forward
CNT30481150Triticum turgidumChara braunii39.8438.1580.52539forward
CNT30704690Triticum turgidumPrunus avium46.1230.7187.02624forward
CNT3055928Triticum turgidumAmborella trichopoda16.2625.0688.18220forward
CNT30323609Triticum turgidumAsparagus officinalis46.1937.5488.32625forward
CNT30103353Triticum turgidumOryza rufipogon33.4145.0290.71452forward
CNT30577638Triticum turgidumOryza barthii17.7437.0490.42240forward
CNT30594767Triticum turgidumEragrostis curvula4.5824.0390.3262forward
CNT30558289Triticum turgidumPanicum hallii14.2632.8883.42193forward
CNT30551470Triticum turgidumOryza brachyantha24.3975.8686.97330forward
CNT30113681Triticum turgidumFicus carica20.437.9182.25276forward
CNT30724231Triticum turgidumLupinus angustifolius5.1728.239070forward

Expression of CNT30394033

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MLESLKAWAFMILSMLAVHPYSPVTRQQGESTTRSETMTFSTLSPSTSLMTLHSPSNFSLSSSCFFFSSSLSSSFRPSLVAETSFLPSNSLS*

>peptide 2 (35 aa)
MNIRRQADLALSRPPPSCSHQRRPPGAACRCRSQG*

>peptide 3 (75 aa)
MPLTKLRYSGINSSQLSMMKTRRTYSLMLLAFFLLSKRSKGALLGTNRTALNSSWPSTEKCLTAKCSSQSLVKLL*

>peptide 4 (80 aa)
MLLPVIGQALVESSILFLVDLLWLPHPDRLLLVDQVPLMRDFLDLLFLLFLLFLLLINILNLALLSILLLLLIFIVRNFLL

Sequence

>CNT30394033
CAGAATTATAGAAATATAGCTAACATATAATAGAACCAACAATAACGAACTGTTCCACGAGTACCACAAACAGCTAGCCGCGCTTAATGTTTGGCCAGCC
AAAAGACAAAACCGATACAGCTAAACGTGCCAAAACCATCCAACGTCGACACTAAAGATAAAAACAACTAGGCGGTGCAGGGCATGAACATCCGACGACA
GGCAGACTTGGCGCTTAGTCGACCTCCTCCATCTTGCTCTCACCAGCGTCGTCCTCCAGGGGCGGCATGTCGGTGTCGTTCTCAGGGTTGATCTCCATGG
TCTTCTTGCTTGACATGTAGCCAGCCATGCTCGAGTCCCTCAAGGCCTGGGCCTTCATGATCCTCTCCATGTTGGCGGTCCACCCATACTCGCCAGTCAC
CAGACAGCAAGGGGAGTCCACAACACGGTCAGAGACGATGACCTTCTCCACCTTGTCGCCCAGCACCTCCTTGATGACCTTGCACAGCCCCTCGAACTTC
TCCTTGAGCTCCTCCTGCTTCTTCTTCTCGTCCTCGCTCTCATCGAGCTTCAGACCCTCCTTGGTGGCAGAGACAAGCTTCTTGCCCTCAAACTCCTTGA
GCTGACCAATGGCATACTCATCAATGGCGTCAACCATGTAGATGACCTCATAGCCCTTCTTCTTCAGCTTCTCAAGGAAGGGAGAGTTCTCCACAGCCTT
CTTGCTCTCACCGGTGATGTAGTAGATCTCGTTCTGTCCCTCCTTCATCCTGGTCACATAGTCCTTGAGGCTCGTCAGTTCATCACCACTCTTGGTGGAG
TGGTACCTCAGAAGCTCAGCAATCTTGGTCCTGTTCTGGGAGTCCTCGTGGATGCCAAGCTTGAGGTTCTTGGAGAAGGCCTCGTAGAACTTGTTGTAGT
CCTCTGAATCAACAATGCCCTTGACAAAGCTCAGGTACTCAGGGATCAACTCCTCACAGTTGTCCATGATGAAGACACGGCGCACATACAGCTTGATGTT
GTTGGCCTTCTTCTTGTTGTCGAAGAGGTCAAAGGGGGCCCTCTTGGGCACAAACAGGACAGCCTTAAACTCAAGCTGGCCCTCAACAGAGAAGTGCTTG
ACAGCCAAATGCTCCTCCCAGTCATTGGTCAAGCTCTTGTAGAAAGCAGCATACTCTTCCTTGTTGATCTCCTCTGGCTTCCTCATCCAGATAGGCTTCT
GCTTGTTGACCAAGTTCCACTCATGAGAGACTTCCTTGATCTTCTTTTTCTTCTTTTCCTTCTCTTCCTTCTCCTCATCAACATCCTCAACCTTGCCCTC
CTCAGTATCCTTCTTCTCCTCCTCATCTTCATCGTCAGAAATTTCCTTCTCGG