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Detailed information on CNT30675624


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT003938, E-value = 3e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517898Setaria viridisJuglans regia32.9622.9882.21208forward
CNT3019808Setaria viridisCitrullus lanatus31.729.8588.5200forward
CNT30729348Setaria viridisCorchorus capsularis28.8420.1184.62182forward
CNT30379140Setaria viridisManihot esculenta42.1631.6383.46266forward
CNT30526134Setaria viridisPhaseolus vulgaris42.3141.9283.9267forward
CNT30630919Setaria viridisVigna unguiculata42.1619.9782.71266forward
CNT30636154Setaria viridisCapsicum annuum20.7628.3583.97131forward
CNT3094731Setaria viridisSolanum tuberosum39.9416.7984.92252forward
CNT30187977Setaria viridisSecale cereale33.9129.6492.52214forward
CNT30394033Setaria viridisTriticum turgidum39.9418.6390.87252forward
CNT30566784Setaria viridisActinidia chinensis33.1227.585.17209forward
CNT30510227Setaria viridisSolanum lycopersicum42.1622.7285.34266forward
CNT30145670Setaria viridisMedicago truncatula24.0937.3584.21152forward
CNT30314068Setaria viridisCamelina sativa31.5413.1386.93199forward
CNT3082269Setaria viridisBrassica juncea34.2333.3385.65216forward
CNT30606420Setaria viridisGossypium raimondii40.7345.0185.21257forward
CNT30212755Setaria viridisHelianthus annuus25.0462.781.65158forward
CNT30625209Setaria viridisDaucus carota34.233286.11216forward
CNT30688537Setaria viridisTriticum urartu15.3741.9997.9497forward
CNT30348495Setaria viridisEragrostis tef39.7884.2395.62251forward
CNT30477326Setaria viridisArabidopsis halleri42.4730.3285.82268forward
CNT30704690Setaria viridisPrunus avium39.312.287.5248forward
CNT3055928Setaria viridisAmborella trichopoda21.7115.686.86137forward
CNT3022206Setaria viridisPopulus trichocarpa32.8138.0584.06207forward
CNT30318584Setaria viridisAsparagus officinalis42.1621.9186.47266forward
CNT30558289Setaria viridisPanicum hallii38.8341.7486.12245forward
CNT30551470Setaria viridisOryza brachyantha42.1661.1588.72266forward
CNT30113681Setaria viridisFicus carica31.2227.0685.79197forward
CNT30724682Setaria viridisLupinus angustifolius14.5837.5583.792forward

Expression of CNT30675624

Peptides detected in this lncRNA

>peptide 1 (95 aa)
LFLFLLLINILNLALLILLIFLILIIRNLLLSGITCDGEGATSLRLPHVLLIIVVLGGHNNSLSNKVGRVETNSKLTDHRHISTSSQSLHELLCS*

>peptide 2 (65 aa)
MNSFVPDRAMVPRLFTRSDLVIPIPLSMIVRMLRGRSSESTMPLTKLSHSGISSSQLSMMKTRRT*

>peptide 3 (36 aa)
SLSLPSPHQHPQPCPPHPSYLPHPHHQKSPSQWYHV*

>peptide 4 (44 aa)
FSFSSFSSSTSSTLPSSSFLSSSSSSSEISFSVVSRVTVKEPPA*

Sequence

>CNT30675624
TTCTCTTTCTCTTCCTTCTCCTCATCAACATCCTCAACCTTGCCCTCCTCATCCTTCTTATCTTCCTCATCCTCATCATCAGAAATCTCCTTCTCAGTGG
TATCACGTGTGACGGTGAAGGAGCCACCAGCCTGAGACTCCCACACGTACTGCTCATCATCGTTGTGCTTGGTGGTCACAACAACTCTCTCAGCAACAAG
GTAGGCAGAGTAGAAACCAACTCCAAACTGACCGATCATAGACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTTCCTGACCGTGCAATG
GTACCAAGGTTGTTCACGAGATCTGACTTGGTCATACCAATACCACTGTCAATGATTGTCAGAATGTTGAGGGGAAGGTCCTCAGAGTCAACGATGCCCT
TGACAAAGCTCAGCCACTCTGGGATCAGCTCCTCACAGTTGTCCATGATGAAGACACGGCGCACATAGAGCTTGATGTTGTTCTGCTTCTTCCTGGTGTC
GAAGAGGTCGAAGGGGGCCCTCTTGGGTACAAAGAGGACAGCCTTGAACTCAAGCTGACCCTCAACAGAGAAGTGCTTCACGGCAAGATGCTCCTCCCAG
TCGTTGGTCAAGCTCTTGTAGAAAGCAGCGT