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Detailed information on CNT30625276


BLAST search results

BLAST vs Swiss-Prot:
sp|O03986|HS904_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONSLYT002404, E-value = 2e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Daucus carotaOryza sativa10.637.1683.22149forward
CNT30523385Daucus carotaSetaria italica17.2131.7680.99242forward
CNT30512942Daucus carotaJuglans regia15.7943.7983.78222forward
CNT3019808Daucus carotaCitrullus lanatus19.9941.9486.48281forward
CNT3071729Daucus carotaQuercus suber17.8589.6481.67251forward
CNT30712364Daucus carotaGlycine max17.0760.4585.42240forward
CNT3094731Daucus carotaSolanum tuberosum58.1154.4382.13817forward
CNT30187977Daucus carotaSecale cereale21.1941.2785.23298forward
CNT30298345Daucus carotaTriticum aestivum32.1564.282.3452forward
CNT30560521Daucus carotaActinidia chinensis32.9364.3982.07463forward
CNT30554909Daucus carotaOryza glaberrima14.4452.7381.28203forward
CNT30145759Daucus carotaMedicago truncatula14.4453.5683.25203forward
CNT3061941Daucus carotaArabidopsis lyrata6.5435.3886.9692forward
CNT30613762Daucus carotaArabis alpina15.4354.2582.49217forward
CNT30606420Daucus carotaGossypium raimondii16.540.6385.34232forward
CNT30652959Daucus carotaRosa chinensis22.3365.2882.17314forward
CNT30204348Daucus carotaHelianthus annuus9.1740.5785.27129forward
CNT30688537Daucus carotaTriticum urartu5.4132.997.3776forward
CNT30348495Daucus carotaEragrostis tef16.5778.1981.55233forward
CNT30477326Daucus carotaArabidopsis halleri33.2152.8381.8467forward
CNT30418103Daucus carotaPapaver somniferum14.7953.3388.46208forward
CNT3022206Daucus carotaPopulus trichocarpa15.7240.6281.9221forward
CNT30558289Daucus carotaPanicum hallii9.7423.3481.02137forward
CNT30551470Daucus carotaOryza brachyantha20.4165.9884.67287forward

Expression of CNT30625276

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MNSECFFTRSLSLRSSRYSSWSSLRWRTIFVPLPSTSPEVSLVTVKDPPAWDSQTYCSSSLCLVVTITFSATR*

>peptide 2 (37 aa)
MRHFFNLLLFLLFLLLLFINFLYLAFLVFLLFLILVI*

>peptide 3 (46 aa)
MNTKLQVFWDQILTVVHDENTTDIQLNVVLLLLRVKEIKGCPLRNK*

>peptide 4 (58 aa)
MMKTRRTYSLMLFCFFFVSKRSKGALLGTNRTALNSSWPSTEKCFTFKCSSQSLVRLL*

>peptide 5 (92 aa)
MLESLYAWAFMILSMLAVQPYSPVTKQHGESTTRSETITFSTLSPKTSLTTLQSPSNFSFSSSFFFFSSSLSSSLSPSLVAETNFFPSNSFN*

>peptide 6 (87 aa)
MENDFCTPSKYLSRSISCNSERSTSLGFPNILFIIVMLSGYDHLLRNKVGRIETNTKLSNHANISTRSKSFHEFFSTRPCNGTQVVYQ

Sequence

>CNT30625276
CCTCTTTCTGAGCTCCTCCATTATAGCATTCTCAGGGATGATTTCCATCGTCTTTTTGCTTGACATATAACCACTCATGCTTGAATCGCTCTATGCCTGG
GCCTTCATGATCCTCTCCATGTTAGCAGTCCAGCCATACTCACCAGTAACCAAGCAACATGGTGAATCCACTACACGATCAGAAACAATAACCTTCTCAA
CTCTGTCCCCCAAAACATCTTTAACAACTTTGCAGAGTCCCTCAAACTTCTCCTTCAGTTCCTCCTTTTTCTTTTTCTCATCTTCACTCTCCTCGAGTTT
AAGCCCCTCCTTGGTTGCAGAAACCAACTTCTTTCCCTCAAATTCCTTCAACTGACCCACGGCATACTCATCAATGGCATCAACCATGTACAACACTTCA
TAACCTTTCTTCTTCAACCTCTCAAGGAAGGGAGAGTTCTCAACAGCCTTCTTGCTCTCCCCGGTAATGTAAAAGATCTCACTCTGGTTCTCTTTCATCC
TGGTGACATAGTCCTTCAGGCTGGTCATTTCCTCCCCACTCTTAGTAGAGTGGTATCTGAGCAACTCAGCAATCTTTGTTTTGTTCTGAGAATCTTCATG
AATACCAAGCTTCAGGTATTCTGGGATCAAATCCTCACAGTTGTCCATGATGAAAACACGACGGACATACAGCTTAATGTTGTTCTGCTTCTTCTTCGTG
TCAAAGAGATCAAAGGGTGCCCTCTTAGGAACAAATAGAACAGCTTTAAATTCAAGCTGGCCTTCAACAGAGAAGTGCTTTACGTTCAAGTGCTCCTCCC
AGTCATTAGTAAGGCTCTTGTAGAAGGCAGCATACTCCTCCTTGGTGATCTCCTCAGGCTTCCTCATCCAGATGGGCTTCTGTTTGTTAACCAAGGACCA
CTCATGAGACACTTCTTTAATCTTCTTCTTTTTCTTCTCTTCCTTCTCCTTCTCTTCATCAACTTCCTCTACCTTGCCTTCCTCGTCTTTCTTCTCTTCC
TCATCCTCGTCATCTGAAATTTCTTTTTCGGTGGTCTTCTCAATCCACAAAGAGATTGGGTAGCTGATGAACTCAGAATGCTTCTTCACAAGATCCTTGA
GCCTGCGCTCCTCAAGGTATTCTAGCTGGTCCTCTTTAAGATGGAGAACGATTTTTGTACCCCTTCCAAGTACCTCTCCAGAAGTATCTCTTGTAACAGT
GAAAGATCCACCAGCTTGGGATTCCCAAACATACTGTTCATCATCGTTATGCTTAGTGGTTACGATCACCTTCTCCGCAACAAGGTAGGCAGAATAGAAA
CCAACACCAAACTGTCCAATCATGCTAACATCAGCACCCGCAGCAAGAGCTTCCATGAATTCTTTAGTACCAGACCTTGCAATGGTACCCAAGTTGTTTA
CCAAAT