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Detailed information on CNT30113681


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001022, E-value = 5e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Ficus caricaSetaria viridis27.0631.2285.79197forward
CNT30517898Ficus caricaJuglans regia65.2552.4983.58475forward
CNT30378101Ficus caricaArabidopsis thaliana35.7129.4882.69260forward
CNT3019808Ficus caricaCitrullus lanatus35.338.3681.71257forward
CNT30729348Ficus caricaCorchorus capsularis73.3559.0184.46534forward
CNT30381694Ficus caricaManihot esculenta70.682.982.88514forward
CNT30402735Ficus caricaBeta vulgaris20.611.0182150forward
CNT30526134Ficus caricaPhaseolus vulgaris66.976.4579.26487forward
CNT30630919Ficus caricaVigna unguiculata70.4738.5178.56513forward
CNT30711421Ficus caricaGlycine max12.531.7189.0191forward
CNT30158908Ficus caricaPistacia vera73.0832.5683.08532forward
CNT30636154Ficus caricaCapsicum annuum16.4825.9784.17120forward
CNT3094731Ficus caricaSolanum tuberosum36.9517.9282.53269forward
CNT30187977Ficus caricaSecale cereale37.9138.2382.97276forward
CNT30394033Ficus caricaTriticum turgidum37.9120.482.25276forward
CNT30560521Ficus caricaActinidia chinensis31.1831.5781.06227forward
CNT30510227Ficus caricaSolanum lycopersicum62.7739.0379.65457forward
CNT30145670Ficus caricaMedicago truncatula23.3541.7784.12170forward
CNT30314068Ficus caricaCamelina sativa67.0332.1981.56488forward
CNT3082269Ficus caricaBrassica juncea52.258.6481.05380forward
CNT30606420Ficus caricaGossypium raimondii28.336.0879.61206forward
CNT30652736Ficus caricaRosa chinensis35.8545.0879.69261forward
CNT30212755Ficus caricaHelianthus annuus34.75100.484.98253forward
CNT30624770Ficus caricaDaucus carota37.2342.8883.76271forward
CNT30688537Ficus caricaTriticum urartu10.8534.284.8179forward
CNT30477326Ficus caricaArabidopsis halleri37.643183.21274forward
CNT30362691Ficus caricaSorghum bicolor55.0840.5579.8401forward
CNT30704690Ficus caricaPrunus avium59.4821.3180.6433forward
CNT30323609Ficus caricaAsparagus officinalis65.5228.6579.87477forward
CNT30558289Ficus caricaPanicum hallii25.8232.0382.98188forward
CNT30551470Ficus caricaOryza brachyantha37.2362.381.18271forward
CNT30724682Ficus caricaLupinus angustifolius32.2895.9282.98235forward

Expression of CNT30113681

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSCHSWLTSLTFFFLISSLSPRQHPQHLLPLPSWSPHPRHH*

>peptide 2 (48 aa)
MAHLLNLLLLDFFSFSSSTSSTSPSSSFLVSSSSSSLTSFSVVFSVQR*

>peptide 3 (48 aa)
MLFIFFLVSNKSNGALLGTKRIALNSSCPSTEKCLTARWSSQSLVRLL*

>peptide 4 (50 aa)
MSLNISMHFLTRFFLMTLRILFCCSISREMLRGRIFRIHHTLDKPEGTQE*

Sequence

>CNT30113681
CAGCTAACTTGGACCTGTTCTGGCTGTCCTCGTGAATACCCAGCTTTAAGTTCTTTGAGAAAGCATCATAGAACTTAGCATAGTCCTCTTTGTTCTCAGC
AATGTCATTGAACATCTCAATGCACTTCTTGACGAGATTCTTCCTGATGACCTTGAGAATCTTGTTCTGTTGCAGCATTTCACGAGAGATGTTGAGAGGC
AGAATCTTCAGAATCCACCACACCCTTGACAAACCCGAGGGTACTCAGGAATGAGCTCCTCACAGTTGTCCATGATGAACACCCTGCGGACGTAGAGCTT
GATGTTGTTCATCTTCTTCCTGGTGTCGAACAAGTCGAATGGGGCTCTCTTGGGTACAAAAAGGATTGCCTTGAATTCCAGCTGCCCTTCAACAGAGAAG
TGCTTGACAGCGAGATGGTCTTCCCAATCATTGGTGAGGCTCTTATAGAATGAGGCATACTCATCCTTTGTGATCTCTTCCGGTTTCCTCAGCCAAATTG
GTTTCTGCTTGTTGATGAGTTGCCACTCATGGCTCACCTCCTTAACCTTCTTCTTCTTGATTTCTTCTCTTTCTCCTCGTCAACATCCTCAACATCTCCT
TCCTCTTCCTTCTTGGTCTCCTCATCCTCGTCATCACTGACTTCCTTCTCGGTGGTCTTCTCAGTCCAAAGGTAAATGGGATAGCTAATGAACTCAGAGT
GCTTCTTCACAAGGTCCTTCAATCTTCT