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Detailed information on CNT3053136


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 8e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Amborella trichopodaOryza sativa32.556.5283.22143forward
CNT30672141Amborella trichopodaSetaria viridis29.3218.2582.95129forward
CNT30520455Amborella trichopodaSetaria italica32.526.8883.92143forward
CNT30282763Amborella trichopodaChenopodium quinoa32.2717.8485.92142forward
CNT30197165Amborella trichopodaPisum sativum14.5520.6587.564forward
CNT30708754Amborella trichopodaGlycine max42.2731.3182.8186forward
CNT30288773Amborella trichopodaTriticum aestivum16.1427.187.3271forward
CNT30221764Amborella trichopodaHordeum vulgare48.8675.4480.47215forward
CNT30386161Amborella trichopodaTriticum turgidum32.523.5283.22143forward
CNT30436586Amborella trichopodaAegilops tauschii32.562.1783.92143forward
CNT30244600Amborella trichopodaAvena sativa35.9167.2382.28158forward
CNT30658632Amborella trichopodaTriticum dicoccoides56.3632.1281.45248forward
CNT30612607Amborella trichopodaArabis alpina58.6447.8780.23258forward
CNT30132533Amborella trichopodaLolium perenne35.9163.7181.65158forward
CNT3013862Amborella trichopodaZea mays49.5531.2378.44218forward
CNT30651400Amborella trichopodaRosa chinensis31.8228.8784.29140forward
CNT30126375Amborella trichopodaCorymbia citriodora24.3232.7283.18107forward
CNT30681050Amborella trichopodaTriticum urartu32.561.1183.22143forward
CNT30477381Amborella trichopodaArabidopsis halleri40.6860.2781.56179forward
CNT30619887Amborella trichopodaCajanus cajan13.4122.7891.5359forward
CNT30370710Amborella trichopodaOryza glumipatula23.6426.3382.69104forward
CNT3038710Amborella trichopodaCucumis melo15.6821.785.5169forward
CNT30329735Amborella trichopodaDioscorea rotundata30.9142.2487.5136forward
CNT30580696Amborella trichopodaEchinochloa crusgalli32.560.0884.62143forward
CNT30117266Amborella trichopodaOryza nivara30.4537.1282.84134forward
CNT30556637Amborella trichopodaPanicum hallii31.5963.4783.45139forward
CNT30725037Amborella trichopodaLupinus angustifolius52.526.9585.28231forward

Expression of CNT3053136

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MISAHLLPSAQPMNMSSTTKRVVVSVKYSCSPAVYHEGVLRMPNFVRNSGMKMPAAPSIAHRQWTSSAC

>peptide 2 (47 aa)
TEDGGMARVSKVGKKVIDGSSACIDGLEPCTHDCQHSQSPILDLLSP*

>peptide 3 (29 aa)
MTANIANLPFLISLVLSSLSCSGDPDRCP*

Sequence

>CNT3053136
CACTGAAGATGGTGGCATGGCCAGGGTCAGCAAGGTGGGCAAAAAGGTTATCGATGGGTCCAGTGCCTGTATAGACGGCTTGGAACCATGCACCCATGAC
TGCCAACATAGCCAATCTCCCATTCTTGATCTCCTTAGTCCTTAGCTCCTTAAGCTGCTCAGGTGACCCAGATCGGTGCCCGTAAGCTTGTTGTTAGGGA
AGATTGGGTCAGTATTGACACACCCTGGCTTTATGATATCGGCCCACCTTCTACCCTCAGCCCAACCGATGAATATGAGCTCAACTACAAAGAGGGTGGT
GGTATCGGTGAAGTACTCTTGCTCACCAGCTGTGTACCATGAGGGGGTGTTGAGAATGCCCAATTTTGTAAGGAATTCAGGGATGAAGATGCCTGCAGCA
CCAAGCATAGCCCACCGGCAGTGGACCAGCTCTGCTTGTT