Detailed information on CNT30221764


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 3e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Hordeum vulgareOryza sativa54.7461.6694.87156forward
CNT30672141Hordeum vulgareSetaria viridis46.6718.8193.23133forward
CNT30520455Hordeum vulgareSetaria italica47.3725.3893.33135forward
CNT30197165Hordeum vulgarePisum sativum23.5121.6186.5767forward
CNT30708754Hordeum vulgareGlycine max43.1620.7183.74123forward
CNT30386161Hordeum vulgareTriticum turgidum52.6324.6798.67150forward
CNT30436586Hordeum vulgareAegilops tauschii54.0466.9698.05154forward
CNT30244600Hordeum vulgareAvena sativa54.0465.5395.45154forward
CNT30658632Hordeum vulgareTriticum dicoccoides76.8428.3798.63219forward
CNT30612607Hordeum vulgareArabis alpina44.9123.7583.59128forward
CNT30132533Hordeum vulgareLolium perenne54.0462.194.16154forward
CNT3013862Hordeum vulgareZea mays68.7728.0890.82196forward
CNT30651400Hordeum vulgareRosa chinensis22.8113.486.1565forward
CNT30680526Hordeum vulgareTriticum urartu56.1428.9398.12160forward
CNT30477381Hordeum vulgareArabidopsis halleri63.8661.2881.32182forward
CNT3053136Hordeum vulgareAmborella trichopoda75.4448.8680.47215forward
CNT3038710Hordeum vulgareCucumis melo34.3930.8283.6798forward
CNT30580975Hordeum vulgareEchinochloa crusgalli47.3756.4993.33135forward
CNT30117266Hordeum vulgareOryza nivara46.3236.5795.45132forward
CNT30556637Hordeum vulgarePanicum hallii44.5657.9992.91127forward
CNT30725037Hordeum vulgareLupinus angustifolius73.3324.3979.43209forward

Expression of CNT30221764

Peptides detected in this lncRNA

>peptide 1 (94 aa)
GMAGVGEVSEEVVDGADGVGVDAAWLDDVCPPAALGPADEDELHDEEGGGVGEVLLLPGGVPRRRVEDADLGQQLWDEDARRAQHRPPACQPRVD

>peptide 2 (80 aa)
MGPMGSVLTQPGLMMSAHRRPSAQPMRMSSTMKRVVVSVKYSCSPAVYHDGVLRMPILVSSSGMKMPAAPSIAHRHVSQES

Sequence

>CNT30221764
GGCATGGCCGGGGTCGGCGAGGTGAGCGAAGAGGTTGTCGATGGGGCCGATGGGGTCGGTGTTGACGCAGCCTGGCTTGATGATGTCTGCCCACCGGCGG
CCCTCGGCCCAGCCGATGAGGATGAGCTCCACGATGAAGAGGGTGGTGGTGTCGGTGAAGTACTCCTGCTCCCCGGCGGTGTACCACGACGGCGTGTTGA
GGATGCCGATCTTGGTCAGCAGCTCTGGGATGAAGATGCCCGCCGCGCCCAGCATCGCCCACCGGCATGTCAGCCAAGAGTCGAT