Detailed information on CNT30708754


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 4e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671443Glycine maxSetaria viridis22.5618.4882.84134forward
CNT30221764Glycine maxHordeum vulgare20.7143.1683.74123forward
CNT30657963Glycine maxTriticum dicoccoides25.5954.2984.87152forward
CNT3013862Glycine maxZea mays24.0720.4982.52143forward
CNT30680526Glycine maxTriticum urartu20.7122.2482.93123forward
CNT3053136Glycine maxAmborella trichopoda31.3142.2782.8186forward
CNT3038710Glycine maxCucumis melo28.9654.0983.14172forward

Expression of CNT30708754

Peptides detected in this lncRNA

>peptide 1 (46 aa)
SKNGSMARICKVGKEVVNRTGGSVDVLEPCTHDSKHGHQGNPHRFR*

>peptide 2 (71 aa)
MCWNHAPMTASMATRVTHIGSGELVVGKDGVSVDTAWLDYVSPSSTLGPANEKELNYEEGSSVREVFQLSS*

>peptide 3 (79 aa)
MGSVLTQPGLIMSAHLLPSAQPMKKSSTMKRVVVSVKYSSSPAEYHEGVFKTPIFVRNSGMKMPAAPNIAHLQGAAWEP*

Sequence

>CNT30708754
CAGCAAAAATGGTAGCATGGCCAGGATCTGCAAGGTGGGCAAAGAGGTTGTCAATAGGACCGGTGGCAGTGTAGATGTGCTGGAACCATGCACCCATGAC
AGCAAGCATGGCCACCAGGGTAACCCACATCGGTTCCGGTGAGCTTGTTGTTGGGAAAGATGGGGTCAGTGTTGACACAGCCTGGCTTGATTATGTCAGC
CCATCTTCTACCCTCGGCCCAGCCAATGAAAAAGAGCTCAACTATGAAGAGGGTAGTAGTGTCCGTGAAGTATTCCAGCTCTCCAGCTGAGTACCATGAA
GGAGTGTTCAAGACACCAATCTTTGTTAGGAATTCTGGAATGAAAATGCCAGCAGCACCCAACATTGCCCATCTGCAGGGTGCTGCCTGGGAACCATAGA
GGTCTGTCAGGCTCAGCAACTGCGCACACTGTAGTGCCCATCGATCGTCCTCCAATTGCTGCTCTCTCCTTTTTCACCCTCAATTTCCTTCCACTAAGAA
AACAACCTCCTGATCCATTCTTCTGCCCGGAACTATGGCAACAGCTGTAATTGCAGAGGAAGCACAAGCGGAAGCCATGGAAGGCCCTCACCCT