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Detailed information on CNT30672141


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Setaria viridisOryza sativa29.9983.7988.68212forward
CNT30221764Setaria viridisHordeum vulgare18.8146.6793.23133forward
CNT30386161Setaria viridisTriticum turgidum18.8121.8893.23133forward
CNT30436586Setaria viridisAegilops tauschii18.8157.8394.74133forward
CNT30244600Setaria viridisAvena sativa18.3955.3293.85130forward
CNT30132533Setaria viridisLolium perenne18.3952.4292.31130forward
CNT30370710Setaria viridisOryza glumipatula17.5431.3995.97124forward
CNT3053136Setaria viridisAmborella trichopoda18.2529.3282.95129forward
CNT30580975Setaria viridisEchinochloa crusgalli19.6658.16100139forward
CNT30117266Setaria viridisOryza nivara18.3936.0196.15130forward
CNT30556637Setaria viridisPanicum hallii17.6857.08100125forward

Expression of CNT30672141

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MGPEREVVPDVGAGELVAGEDGVSVDAPGLDDLDDEEGGGVGEVLLLAGGVPEGRVEDADLGQELRDEDARRAEHRPP

>peptide 2 (92 aa)
MSLWEYNNVFLRVHAWGRSERWYPTSVPVSLLLGKMGSVLTLPGLMISMMKRVVVSVKYCCSPAVYQKGVLRMPILVRNSGMKMPAAPSIAHR

>peptide 3 (35 aa)
MRGIARSTQIANSNSSFGGCRWGRCRCTRPETRRP*

>peptide 4 (40 aa)
WLQHSTNTRSRGMHRSTQAIESSQSIPSHKKEKVASTINL*

>peptide 5 (57 aa)
GYNIVQIHDQEACIAPHKPLNHHSLFRPTKRKKSHRPSTYNNLHLMHAWYSTQHSDR*

>peptide 6 (58 aa)
MTASMARRPFLISLVRSSLIFSGEPLPQPSGSNHRPPGYLNFYMHFQHTEISHGYEDC*

Sequence

>CNT30672141
TGGTTACAACATAGTACAAATACACGATCAAGAGGCATGCATCGCTCCACACAAGCCATTGAATCATCACAGTCTATTCCGTCCCACAAAAAGGAAAAAG
TCGCATCGACCATCAACCTATAACAATCTCCACCTCATGCATGCGTGGTATAGCACGCAGCACTCAGATCGCTAACTCCAACTCCTCATTTGGGGGTTGT
CGATGGGGCCGGTGCCGGTGTACTCGGCCTGAAACCAGGCGCCCATGACGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTT
GATCTTCTCCGGCGAGCCGCTGCCCCAGCCGAGCGGGTCAAACCACAGGCCACCAGGGTACCTTAATTTTTACATGCATTTCCAGCACACAGAGATCAGC
CATGGATATGAGGACTGCTAGCAGCTAGATGAGTCTTTGGGAATATAATAATGTTTTCTTGCGTGTTCATGCATGGGGCCGGAGCGAGAGGTGGTACCCG
ACGTCGGTGCCGGTGAGCTTGTTGCTGGGGAAGATGGGGTCAGTGTTGACGCTCCCGGGCTTGATGATCTCGATGATGAAGAGGGTGGTGGTGTCGGTGA
AGTACTGCTGCTCGCCGGCGGTGTACCAGAAGGGCGTGTTGAGGATGCCGATCTTGGTCAGGAACTCCGGGATGAAGATGCCCGCCGCGCCGAGCATCGC
CCACCGG