Detailed information on CNT3013862


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SYW8|LHCA2_ARATH, E-value = 3e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Zea maysOryza sativa19.0552.5795.49133forward
CNT30671443Zea maysSetaria viridis20.772096.55145forward
CNT30708754Zea maysGlycine max20.4924.0782.52143forward
CNT30288773Zea maysTriticum aestivum10.3227.4895.8372forward
CNT30221764Zea maysHordeum vulgare28.0868.7790.82196forward
CNT30386161Zea maysTriticum turgidum18.1920.8990.55127forward
CNT30436586Zea maysAegilops tauschii18.7756.9691.6131forward
CNT30244600Zea maysAvena sativa18.7755.7490.08131forward
CNT30657963Zea maysTriticum dicoccoides29.2372.8692.65204forward
CNT30612607Zea maysArabis alpina29.9438.7879.43209forward
CNT30132533Zea maysLolium perenne18.7752.8290.84131forward
CNT30651400Zea maysRosa chinensis21.230.5281.76148forward
CNT30126375Zea maysCorymbia citriodora13.6129.0587.3795forward
CNT30680526Zea maysTriticum urartu22.2128.0392.26155forward
CNT30477381Zea maysArabidopsis halleri31.2373.480.28218forward
CNT30370710Zea maysOryza glumipatula18.7733.1694.66131forward
CNT3053136Zea maysAmborella trichopoda31.2349.5578.44218forward
CNT30580975Zea maysEchinochloa crusgalli17.7751.8897.58124forward
CNT30117266Zea maysOryza nivara15.6230.1994.5109forward
CNT30725037Zea maysLupinus angustifolius32.6626.679.39228forward

Expression of CNT3013862

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVAWPGSASMARRPFLISLVRSSLIFSGEPEPQPSGSNHRPPGYLIENRHMDN*

>peptide 2 (48 aa)
KRKSSISAIKPNNACMCGSTPRTAKFIRAPHLGVKAWIKNTITRISNQ*

>peptide 3 (33 aa)
KEKVPYRPSNLTMHACVVALLELPSSSELLIWG*

>peptide 4 (79 aa)
MYIPDVGAGELVAGEDGIGVDASGLDDVSPTAALGPADEDELDDEEGGGVGEVLLLAGGVPEGRVEDADLGQELRDEDTR

>peptide 5 (64 aa)
MGSVLTLPGLMMSAQRRPSAQPMRMSSMMKRVVVSVKYCCSPAVYQKGVLRTPILVRNSGMKIPA

Sequence

>CNT3013862
AAAAAGAAAAAGTTCCATATCGGCCATCAAACCTAACAATGCATGCATGTGTGGTAGCACTCCTCGAACTGCCAAGTTCATCAGAGCTCCTCATTTGGGG
GTGAAGGCCTGGATCAAGAACACAATAACAAGAATCTCAAATCAGTAACCGAGAGCGTCGATCGCACAAAAGCTGTGACGAATTGATTCAGGTGACCTGG
AAGATGGTGGCGTGGCCAGGGTCGGCGAGCATGGCGAGGCGTCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTTGATCTTCTCCGGCGAGCCGGAGCCCC
AGCCGAGCGGGTCAAACCACAGGCCACCAGGGTACCTTATAGAGAACAGACACATGGATAATTAATTAATCGTTAGCCTTTTGTAAGGGCGAGCGAGCGA
CTCCTTGTTTTTTTTTGCCGGCCGGACTGATGCAAGCAAACGGAGAGAGAGAGAGAGATGTACATACCCGACGTCGGTGCCGGTGAGCTTGTTGCTGGGG
AAGATGGGATCGGTGTTGACGCTTCCGGGCTTGATGATGTCAGCCCAACGGCGGCCCTCGGCCCAGCCGATGAGGATGAGCTCGATGATGAAGAGGGTGG
TGGTGTCGGTGAAGTACTGCTGCTCGCCGGCGGTGTACCAGAAGGGCGTGTTGAGGACGCCGATCTTGGTCAGGAACTCCGGGATGAAGATACCCGCC