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Detailed information on CNT30386161


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Triticum turgidumOryza sativa31.2575.195.79190forward
CNT30672141Triticum turgidumSetaria viridis21.8818.8193.23133forward
CNT30288773Triticum turgidumTriticum aestivum14.4733.5998.8688forward
CNT30221764Triticum turgidumHordeum vulgare24.6752.6398.67150forward
CNT30436586Triticum turgidumAegilops tauschii30.9281.7498.94188forward
CNT30244600Triticum turgidumAvena sativa30.928095.74188forward
CNT30657523Triticum turgidumTriticum dicoccoides60.5343.6100368forward
CNT30612607Triticum turgidumArabis alpina25.9929.3181.65158forward
CNT30132533Triticum turgidumLolium perenne30.7675.495.72187forward
CNT3013862Triticum turgidumZea mays20.8918.1990.55127forward
CNT30680374Triticum turgidumTriticum urartu86.0289.5598.47523forward
CNT30477381Triticum turgidumArabidopsis halleri18.7538.3883.33114forward
CNT30370710Triticum turgidumOryza glumipatula20.5631.6593.6125forward
CNT3053136Triticum turgidumAmborella trichopoda23.5232.583.22143forward
CNT3038710Triticum turgidumCucumis melo26.9751.5780.49164forward
CNT30117266Triticum turgidumOryza nivara30.4351.2591.35185forward

Expression of CNT30386161

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MHCSTITYHHPRSTSQERKKSSSTSDLLPRGSTLLGLVANSHRVPYLGAKA*

>peptide 2 (70 aa)
MVAWPGSARMSSTMKRVVVSVKYSCSPAVYHDGVLRMPILVSSSGMKMPAAPSIAHRQCTSSACTFHRKLS

>peptide 3 (83 aa)
GCICSYNVRPLGDVARLVDNANIIMFKRVFIFYIGYNTRVQVHIQQACIAPQLHTIIHGLLPRKEKNQVPPAIFFPVVAHSSD*

Sequence

>CNT30386161
GGCTGTATATGCTCTTATAATGTTAGACCATTGGGCGACGTCGCGAGACTCGTAGACAATGCCAACATAATAATGTTCAAAAGGGTATTCATTTTTTACA
TCGGCTACAACACCAGGGTACAAGTACACATCCAACAAGCATGCATTGCTCCACAATTACATACCATCATCCACGGTCTACTTCCCAGGAAAGAAAAAAA
TCAAGTTCCACCAGCGATCTTCTTCCCCGTGGTAGCACACTCCTCGGATTAGTTGCTAACTCCCACCGTGTTCCTTACTTGGGGGCAAAGGCCTAAAACG
TAACACCAAAAAGGGTCATACATCAGTACCCAAAAAATCATACATACACACATATATAGTACCAATATAATGTGTAGCATACGCGTACCCGGAAGATGGT
GGCGTGGCCGGGGTCGGCGAGGATGAGCTCCACGATGAAGAGGGTGGTGGTGTCGGTGAAGTACTCCTGCTCCCCGGCGGTGTACCACGACGGTGTGTTG
AGGATGCCGATCTTGGTCAGCAGCTCCGGGATGAAGATGCCCGCCGCGCCCAGCATCGCCCACCGGCAGTGCACCAGCTCCGCCTGCACGTTCCACCGCA
AGCTCTCC