« Back to Avena sativa search


Detailed information on CNT30244600


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Avena sativaOryza sativa87.2381.0394.63205forward
CNT30672141Avena sativaSetaria viridis55.3218.3993.85130forward
CNT30520455Avena sativaSetaria italica77.8734.493.99183forward
CNT30288773Avena sativaTriticum aestivum37.4533.5995.4588forward
CNT30221764Avena sativaHordeum vulgare65.5354.0495.45154forward
CNT30386161Avena sativaTriticum turgidum8030.9295.74188forward
CNT30436586Avena sativaAegilops tauschii96.698.796.92227forward
CNT30659042Avena sativaTriticum dicoccoides87.2369.9796.1205forward
CNT30612607Avena sativaArabis alpina74.0432.2882.76174forward
CNT30132533Avena sativaLolium perenne94.8989.9296.86223forward
CNT3013862Avena sativaZea mays55.7418.7790.08131forward
CNT30681359Avena sativaTriticum urartu85.5327.8895.52201forward
CNT30339489Avena sativaEragrostis tef66.819.2381.53157forward
CNT30477381Avena sativaArabidopsis halleri48.5138.3885.96114forward
CNT30370710Avena sativaOryza glumipatula68.5140.7693.79161forward
CNT3053136Avena sativaAmborella trichopoda67.2335.9182.28158forward
CNT3038710Avena sativaCucumis melo69.7951.5779.88164forward
CNT30102835Avena sativaOryza rufipogon28.096.2286.3666forward
CNT30577305Avena sativaOryza barthii28.097.2586.3666forward
CNT30580975Avena sativaEchinochloa crusgalli77.8776.5793.99183forward
CNT30556637Avena sativaPanicum hallii74.8980.3793.75176forward

Expression of CNT30244600

Peptides detected in this lncRNA

>peptide 1 (77 aa)
GVGEVSEEVVDGDELHDEERGGVREVLLLAGGVPRRRVEDADLGQELRDEDARRAQHRPPAVHQLRLHVPLQALRVRS

>peptide 2 (66 aa)
MGMSSTTKSVVVSVKYSCSPAVYHDGVLRMPILVRSSGMKMPAAPSIAHRQCTSSACTFHFKLSGSD

Sequence

>CNT30244600
CGGGGTCGGCGAGGTGAGCGAAGAGGTTGTCGATGGGGATGAGCTCCACGACGAAGAGCGTGGTGGTGTCCGTGAAGTACTCCTGCTCGCCGGCGGTGTA
CCACGACGGCGTGTTGAGGATGCCGATCTTGGTCAGGAGCTCCGGGATGAAGATGCCCGCCGCGCCCAGCATCGCCCACCGGCAGTGCACCAGCTCCGCC
TGCACGTTCCACTTCAAGCTCTCCGGGTCCGATCC