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Detailed information on CNT30556637


BLAST search results

BLAST vs Swiss-Prot:
sp|P13869|CB12_PETHY, E-value = 3e-40

BLAST vs NONCODE:
NONBNAT006615, E-value = 1e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Panicum halliiOryza sativa81.2870.3696.07178forward
CNT30672141Panicum halliiSetaria viridis57.0817.68100125forward
CNT30520455Panicum halliiSetaria italica106.8543.9892.74234forward
CNT30282763Panicum halliiChenopodium quinoa58.4516.0884.38128forward
CNT30708688Panicum halliiGlycine max97.7258.9579.44214forward
CNT30221764Panicum halliiHordeum vulgare57.9944.5692.91127forward
CNT30385452Panicum halliiTriticum turgidum101.8398.6793.27223forward
CNT30436586Panicum halliiAegilops tauschii77.6373.9195.29170forward
CNT30244600Panicum halliiAvena sativa80.3774.8993.75176forward
CNT30659042Panicum halliiTriticum dicoccoides81.2860.7594.94178forward
CNT30612607Panicum halliiArabis alpina66.6727.0981.51146forward
CNT30131664Panicum halliiLolium perenne7971.1993.64173forward
CNT30681050Panicum halliiTriticum urartu106.8510088.89234forward
CNT30339489Panicum halliiEragrostis tef46.58683.33102forward
CNT30370710Panicum halliiOryza glumipatula47.4926.3396.15104forward
CNT3053136Panicum halliiAmborella trichopoda63.4731.5983.45139forward
CNT30102835Panicum halliiOryza rufipogon28.315.8487.162forward
CNT30577305Panicum halliiOryza barthii28.316.8187.162forward
CNT30580716Panicum halliiEchinochloa crusgalli10083.9198.63219forward
CNT30117266Panicum halliiOryza nivara61.1937.1296.27134forward

Expression of CNT30556637

Peptides detected in this lncRNA

>peptide 1 (71 aa)
PTSVPVSLLLGKMGVVVSVKYCCSPAVYQKGVLRMPILVRNSGMKMPAAPSIAHRQCTSSACTFHRKLSGSD

>peptide 2 (72 aa)
PDVGAGELVVGEDGGGGVGEVLLLAGGVPEGRVEDADLGQELRDEDARRAEHRPPAVHQLRLHVPSQALRVRS

Sequence

>CNT30556637
CCCGACGTCGGTGCCGGTGAGCTTGTTGTTGGGGAAGATGGGGGTGGTGGTGTCGGTGAAGTACTGCTGCTCGCCGGCGGTGTACCAGAAGGGCGTGTTG
AGGATGCCGATCTTGGTCAGGAACTCCGGGATGAAGATGCCCGCCGCGCCGAGCATCGCCCACCGGCAGTGCACCAGCTCCGCCTGCACGTTCCATCGCA
AGCTCTCCGGGTCAGATCC