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Detailed information on CNT30370710


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Oryza glumipatulaOryza sativa33.1651.7899.24131forward
CNT30672141Oryza glumipatulaSetaria viridis31.3917.5495.97124forward
CNT30520455Oryza glumipatulaSetaria italica31.3923.3195.97124forward
CNT30288773Oryza glumipatulaTriticum aestivum22.2833.5994.3288forward
CNT30220915Oryza glumipatulaHordeum vulgare32.9157.2793.85130forward
CNT30386161Oryza glumipatulaTriticum turgidum31.6520.5693.6125forward
CNT30436586Oryza glumipatulaAegilops tauschii41.5271.394.51164forward
CNT30244600Oryza glumipatulaAvena sativa40.7668.5193.79161forward
CNT30659042Oryza glumipatulaTriticum dicoccoides33.1644.7194.66131forward
CNT30132533Oryza glumipatulaLolium perenne45.0671.7794.38178forward
CNT3013862Oryza glumipatulaZea mays33.1618.7794.66131forward
CNT30681359Oryza glumipatulaTriticum urartu32.1517.6193.7127forward
CNT30477381Oryza glumipatulaArabidopsis halleri28.8638.3882.46114forward
CNT3053136Oryza glumipatulaAmborella trichopoda26.3323.6482.69104forward
CNT3038710Oryza glumipatulaCucumis melo25.5731.7682.18101forward
CNT30580975Oryza glumipatulaEchinochloa crusgalli31.3951.8895.97124forward
CNT30117266Oryza glumipatulaOryza nivara31.6534.6398.4125forward
CNT30556637Oryza glumipatulaPanicum hallii26.3347.4996.15104forward

Expression of CNT30370710

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGEEVVDGDELDDEEGGGVGEVLLLAGGVPRRRVEDADLGQELRDEDAR

>peptide 2 (57 aa)
MVAWPGSARWAKRLSMGMSSMMKRVVVSVKYCCSPAVYHDGVLRMPILVRNSGMKMPA

Sequence

>CNT30370710
CTGAAATTCACACACAAACATCACCAAATTAGTGACTGAATCAATGTGGTATCTCTGATGAGATATTCAGGTTGCAGGAGAGGTGCGTATAGGAAACTGA
AACTCTTTTAATCACTCGGGTGAACGTCCACTCGTTTATTACACGTTAACTAAATGGTTATAAAAAATTTTAACAAGATAAACTAATATGCAATAGTGTT
TATGGACTACGGACCTGGAAGATGGTGGCGTGGCCGGGGTCGGCGAGATGGGCGAAGAGGTTGTCGATGGGGATGAGCTCGATGATGAAGAGGGTGGTGG
TGTCGGTGAAGTATTGCTGCTCGCCGGCGGTGTACCACGACGGCGTGTTGAGGATGCCGATCTTGGTCAGGAACTCCGGGATGAAGATGCCCGCC