Detailed information on CNT30477381


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Arabidopsis halleriOryza sativa38.3845.0682.46114forward
CNT30671443Arabidopsis halleriSetaria viridis44.1118.0783.21131forward
CNT30520455Arabidopsis halleriSetaria italica39.0621.881.03116forward
CNT30708597Arabidopsis halleriGlycine max83.8449.878.71249forward
CNT30288773Arabidopsis halleriTriticum aestivum28.2832.0684.5284forward
CNT30221764Arabidopsis halleriHordeum vulgare61.2863.8681.32182forward
CNT30386161Arabidopsis halleriTriticum turgidum38.3818.7583.33114forward
CNT30436586Arabidopsis halleriAegilops tauschii38.3849.5784.21114forward
CNT30244600Arabidopsis halleriAvena sativa38.3848.5185.96114forward
CNT30658632Arabidopsis halleriTriticum dicoccoides67.3425.9182.5200forward
CNT30612607Arabidopsis halleriArabis alpina95.6252.6992.96284forward
CNT30132533Arabidopsis halleriLolium perenne45.7954.8483.09136forward
CNT3013862Arabidopsis halleriZea mays73.431.2380.28218forward
CNT30680526Arabidopsis halleriTriticum urartu51.1827.4982.89152forward
CNT30370710Arabidopsis halleriOryza glumipatula38.3828.8682.46114forward
CNT3053136Arabidopsis halleriAmborella trichopoda60.2740.6881.56179forward
CNT30581231Arabidopsis halleriEchinochloa crusgalli33.6746.383100forward
CNT30725037Arabidopsis halleriLupinus angustifolius83.528.9480.65248forward
CNT3050430Arabidopsis halleriCucumis sativus35.3529.5883.81105forward

Expression of CNT30477381

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MISAHLRPSAHPIKMSSTTKSVVLSVKYSCSPAVYHDGVLRIPIFVRNSGMNIPAAPSI

>peptide 2 (34 aa)
LGKPIPNPRGQTITHPGNQRLCPSVCCLGRLGQC*

Sequence

>CNT30477381
TCTGGGCAAACCGATCCCCAACCCAAGGGGTCAAACCATAACCCACCCGGGTAACCAACGTCTGTGCCCGTCAGTTTGTTGTTTGGGAAGACTGGGTCAG
TGTTGACGCTACCGGGCTTGATGATATCGGCCCATCTACGTCCTTCGGCCCATCCGATCAAGATGAGCTCAACGACGAAGAGTGTGGTTTTGTCCGTGAA
ATACTCTTGCTCTCCCGCCGTGTACCACGATGGAGTGTTGAGGATTCCAATCTTCGTTAGGAACTCCGGGATGAATATCCCGGCGGCTCCTAGCATC