Detailed information on CNT30132533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672141Lolium perenneSetaria viridis52.4218.3992.31130forward
CNT30288773Lolium perenneTriticum aestivum35.4833.5995.4588forward
CNT30221764Lolium perenneHordeum vulgare62.154.0494.16154forward
CNT30386161Lolium perenneTriticum turgidum75.430.7695.72187forward
CNT30436586Lolium perenneAegilops tauschii91.1398.2696.46226forward
CNT30244600Lolium perenneAvena sativa89.9294.8996.86223forward
CNT30612607Lolium perenneArabis alpina70.1632.2882.18174forward
CNT3013862Lolium perenneZea mays52.8218.7790.84131forward
CNT30477381Lolium perenneArabidopsis halleri54.8445.7983.09136forward
CNT30370710Lolium perenneOryza glumipatula71.7745.0694.38178forward
CNT3053136Lolium perenneAmborella trichopoda63.7135.9181.65158forward
CNT3038710Lolium perenneCucumis melo56.4544.0380.71140forward
CNT30117266Lolium perenneOryza nivara56.4538.7895140forward

Expression of CNT30132533

Peptides detected in this lncRNA

>peptide 1 (81 aa)
PEDGGVAGVGEVGEEVVDGDELHDEERRGVGEVLLLAGGVPRRRVEDADLGQELRDEDTRRSQHRPPAVHQLRLHVPPQALG

>peptide 2 (81 aa)
LKMVAWPGSARWAKRLSMGMSSTTKSVVVSVKYSCSPAVYHDGVLRMPILVRSSGMKIPAAPSIAHRQCTSSACTFHRKLSG

Sequence

>CNT30132533
CCCTGAAGATGGTGGCGTGGCCGGGGTCGGCGAGGTGGGCGAAGAGGTTGTCGATGGGGATGAGCTCCACGACGAAGAGCGTCGTGGTGTCGGTGAAGTA
CTCCTGCTCGCCGGCGGTGTACCACGACGGCGTGTTGAGGATGCCGATCTTGGTCAGGAGCTCCGGGATGAAGATACCCGCCGCTCCCAGCATCGCCCAC
CGGCAGTGCACCAGCTCCGCCTGCACGTTCCACCGCAAGCTCTCGGGG