Detailed information on CNT30658632


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 7e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671621Triticum dicoccoidesSetaria viridis15.0323.9293.1116forward
CNT30221764Triticum dicoccoidesHordeum vulgare28.3776.8498.63219forward
CNT30477381Triticum dicoccoidesArabidopsis halleri25.9167.3482.5200forward
CNT3053136Triticum dicoccoidesAmborella trichopoda32.1256.3681.45248forward
CNT30103189Triticum dicoccoidesOryza rufipogon8.4228.0289.2365forward
CNT30496219Triticum dicoccoidesDigitaria exilis18.2662.3993.62141forward

Expression of CNT30658632

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVAWPGSASMARRPFLISLVRSSLSFSGEPVP*

>peptide 2 (91 aa)
MGSVLTQPGLMMSAHRRPSAQPMRMSSTMKRVVVSVKYSCSPAVYHDGVLRMPILVSSSGMKMPAAPSIAHRQCTSSACTFHRKLSGSDPTP

>peptide 3 (65 aa)
DNANIIMFKRVFIFYIGYNTRVQVHIQQACIAPQLHTIIHGLLPRKEKNQVPPAIFFPVVAHSSD*

>peptide 4 (79 aa)
QCQHNNVQKGIHFLHRLQHQGTSTHPTSMHCSTITYHHPRSTSQERKKSSSTSDLLPRGSTLLGLVANSHRVPYLGAKA*

Sequence

>CNT30658632
GACAATGCCAACATAATAATGTTCAAAAGGGTATTCATTTTTTACATCGGCTACAACACCAGGGTACAAGTACACATCCAACAAGCATGCATTGCTCCAC
AATTACATACCATCATCCACGGTCTACTTCCCAGGAAAGAAAAAAATCAAGTTCCACCAGCGATCTTCTTCCCCGTGGTAGCACACTCCTCGGATTAGTT
GCTAACTCCCACCGTGTTCCTTACTTGGGGGCAAAGGCCTAAAACGTAACACCAAAAAGGGTCATACATCAGTACCCAAAAAATCATACATACACACATA
TATAGTACCAATATAATGTGTAGCATACGCGTACCCGGAAGATGGTGGCGTGGCCGGGGTCGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGGT
GCGCAGCTCCTTGAGCTTCTCGGGCGAGCCGGTGCCGTAGCCGAGCGGGTCAAACCACAGACCACCGGGGTACCTTAGCTTGTTGTTGGGGAAGATGGGG
TCGGTGTTGACGCAGCCGGGCTTGATGATGTCTGCCCACCGGCGGCCCTCGGCCCAGCCGATGAGGATGAGCTCCACGATGAAGAGGGTGGTGGTGTCGG
TGAAGTACTCCTGCTCCCCGGCGGTGTACCACGACGGTGTGTTGAGGATGCCGATCTTGGTCAGCAGCTCCGGGATGAAGATGCCCGCCGCGCCCAGCAT
CGCCCACCGGCAGTGCACCAGCTCCGCCTGCACGTTCCACCGCAAGCTCTCCGGGTCGGATCCTACACCGCA